a49aa905cc696a6d5928e5434003056c *DESCRIPTION
1219b4a3d8aa625e7ae23ca687cfcc4d *LICENSE
ceda8ed0108623ef646af6a0adde9f79 *NAMESPACE
d966842a7b92f3f68014c329d0d5697d *R/extract_modification.R
ee0f3d50d51a373851a276b0c634475d *R/peptide_cluster_quantification.R
a0dc5cc1e432f42445f077d0904c49cf *R/peptide_plot.R
d29b685eb8d75df90fe74614216be822 *R/read_file.R
32bd80fafce272ba376d934aa89cb7b5 *R/runShinyApp.R
7bfe4666c77705013011d9c65e332994 *R/sequence_matching_functions.R
883eaf56aa642ba0222bc5fb315b5641 *R/strip_sequence.R
5e3cbae22ef750350dee331c9c5f3dcb *README.md
1cda7c4794970f2ddec6c6440827ddeb *build/vignette.rds
38b4e7c845f9fc015f5b102164c18b3d *inst/doc/PepMapViz.R
31e16680dd95122245cd8cedb1436e55 *inst/doc/PepMapViz.Rmd
28c758c2e2fc12db8d73f542130332ba *inst/doc/PepMapViz.html
3a9b19157fb4e2e2f494072888021d0d *inst/extdata/example_PEAKS_metadata/PEAKS_example_metadata.csv
e41b524d77d2220c8f5c7773ca391e18 *inst/extdata/example_PEAKS_result/PEAKS_example.csv
481dbf1d8bc3aa14802e2265b3b9ce16 *inst/extdata/example_plot.png
0305e897012ed3de5ebb88f47828455f *inst/shiny_apps/PepMapVizApp/server.R
a5f5a9d2cb9c48a6197e3b2632d13c62 *inst/shiny_apps/PepMapVizApp/ui.R
2b86437a730eeb7a6bd9598292abaf49 *man/calculate_Area.Rd
e225ac242cc5bebd3de5dc422c1a3ade *man/calculate_PSM.Rd
ed36125bea226cf523aa94af95b68bc0 *man/calculate_all_Area.Rd
0bb67a53aac86c50b826ef380bae9614 *man/calculate_all_PSM.Rd
b649eb34d8daa2777c781a0bb187dab4 *man/combine_files_from_folder.Rd
6c46af668169a7ddc7f477c63295378b *man/convert_to_regex_pattern.Rd
489853e61dcc39111158a8ab50945e3b *man/create_peptide_plot.Rd
0cf11b3dbfce26181ec47f0127423a73 *man/match_and_calculate_positions.Rd
9ca6bd170975825df44af3c2888d0667 *man/obtain_mod.Rd
46660f9edde5ef515f15b4f7d91d30f6 *man/obtain_mod_Comet.Rd
945e17f99baf25a666b42290975d799d *man/obtain_mod_DIANN.Rd
eba41360216278170b72c5a712bb489e *man/obtain_mod_MSFragger.Rd
e8df63486d4473fa7357a9412ab95cb0 *man/obtain_mod_Maxquant.Rd
af37f91edddbe4494ddda39847ce16c3 *man/obtain_mod_PEAKS.Rd
fff3b66b0ef78e5b48c52a03a29b1108 *man/obtain_mod_Skyline.Rd
12a3f49e32b89a1628e031c412b7b221 *man/obtain_mod_Spectronaut.Rd
524a4879966cee982e06c384dc5d9318 *man/obtain_mod_mzIdenML.Rd
b7d73bdd1bbe8bd915fec473465f8b7f *man/obtain_mod_mzTab.Rd
283cc4d7d8504be153b6e63a358d6292 *man/peptide_quantification.Rd
046ebc7b1d49ac119afcfe25910bfb2e *man/run_pepmap_app.Rd
89c4205186d4779c2a93709266035567 *man/strip_sequence.Rd
f556c2615208ad498a98eacdd1fa5ac7 *man/strip_sequence_Comet.Rd
038f3512ded91333e67b6fd30331a390 *man/strip_sequence_DIANN.Rd
47436138e4f05d865206e35befba62a3 *man/strip_sequence_MSFragger.Rd
d938a22b94296a0e35ac4589010cb8e2 *man/strip_sequence_Maxquant.Rd
a1ec49f890e5890f72ee9305d8c7ffee *man/strip_sequence_PEAKS.Rd
9146c362a670cbdd1071c68b5ca2964b *man/strip_sequence_Skyline.Rd
941fe5a8e27fe1548f9eb66d3ca3edfd *man/strip_sequence_Spectronaut.Rd
b3cc214f5c84eb61a2f639dbb5fc8671 *tests/testthat.R
99790919bc3cb091446973ed1c8290e9 *tests/testthat/test_obtain_mod.R
cd0adb089df4e2a59c9a7e8ffc03acb5 *tests/testthat/test_peptide_quantification.R
9fc4db0074f51758d5296d1680c02bef *tests/testthat/test_sequence_match.R
fbc11dafb726e36e3a957fa9a6629025 *tests/testthat/test_strip_sequence.R
31e16680dd95122245cd8cedb1436e55 *vignettes/PepMapViz.Rmd
