22bd53f8d9115ab69fe6e76ebcaf9df9 *DESCRIPTION
83c4763b7859024d1a73fca09c4f826a *NAMESPACE
85270058f24b0c2b1d5106f5a51a98cd *NEWS.md
0191f6b688c8e0268788aba64a28c9d1 *R/ploidy_est.R
e0987939ae53a5659c9d521b6aec0e77 *R/plots.R
5ea61f0c2a71d389873f58adcf741ad7 *R/prepare.R
3517e68649e89b31a98ec717a990e656 *R/simulate_inputs.R
914364414ddaa72af2b521ecfd580b7e *R/standardization.R
9c378b7a70a21c49a23722cd65bf9249 *R/utils.R
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
dfa42a2ab2440bd22a04998952e82b5f *build/vignette.rds
c3b47d03b7314b274a2871f976fcb81a *inst/CITATION
27b3ecf77458f3c8bc6099e77a3fa36d *inst/WORDLIST
e0c4742379aaa5a815de65d8fadeaf5b *inst/doc/Qploidy.R
4ba7a3bf864ad978a1f0b4918daa65a0 *inst/doc/Qploidy.Rmd
4272a1b2bd84932c1471da02e6092fe2 *inst/doc/Qploidy.html
507593f4b9cbac5f4d4da22d83883556 *man/all_resolutions_plots.Rd
fba6e509d1cd30b227cf45b9e5d7711e *man/area_estimate_ploidy.Rd
c18bcd6c3277942cc44f8a7bed668aea *man/clean_summary.Rd
91b1ec5e283730374d6633db9f834c72 *man/find_header_line.Rd
d32933833e029c54b3a3e826ca96e5b3 *man/get_R_theta.Rd
48eef036947ea1d6c465936b708f0eb2 *man/get_aneuploids.Rd
3b6be6c600c412413f1e94bd19e82812 *man/get_baf.Rd
3f24dabcd029eef9b9986fbd196eddc1 *man/get_baf_par.Rd
7778d0654736ac46bc79626bd8ba5e90 *man/get_centers.Rd
c31df0d9bcd1e80ba35e0efd331a1f67 *man/get_zscore.Rd
ef171c41ffe7e2e0147475ae466b901e *man/merge_arms_format.Rd
eff351a625e70045492224533719842e *man/mode.Rd
e10cb460b0207a92d32c3a4e477cfad7 *man/pascalTriangle.Rd
fe0fcf02fe86406e3d13175943e4cab0 *man/plot_baf.Rd
bb8cbd93b0a191b932769e503dd4269d *man/plot_baf_hist.Rd
d0fddbc5cd236ed0c96f66640f91db41 *man/plot_qploidy_standardization.Rd
75c59b211292ce0be71109202e6ba8ce *man/print.qploidy_area_ploidy_estimation.Rd
6537a79b6f1b4a54585f925e85c5820d *man/print.qploidy_standardization.Rd
a3fa24c75389ec8d60dac1338fa1b0cb *man/qploidy_read_vcf.Rd
6a25ce32174c5d8cafe580f0e8126eb1 *man/read_axiom.Rd
849f07bfa6c0847b7d1b5a172cdafa05 *man/read_illumina_array.Rd
ea547f149ce693cac8c7a1024c0ae725 *man/read_qploidy_standardization.Rd
a6a59fba5370f8692e7bd36b42a3b2c2 *man/rm_outlier.Rd
71e69333ef38bf02dfd7a0a9f68ef844 *man/simulate_axiom_summary.Rd
385690192b7e769b99906f84f6e2b25e *man/simulate_illumina_file.Rd
70a0f0292550835adb2d19c3ccb1232a *man/simulate_standardization_input.Rd
12b3050ca68c070e95d4837be36ee433 *man/simulate_vcf.Rd
4c9123b2a4c7a963c81c1801f1e643b7 *man/standardize.Rd
a5419f369fe201b16ee04d38a6c588b4 *man/summary_to_fitpoly.Rd
882835f642e19f41ca1d401c8b5403be *man/updog_centers.Rd
5bf7c663577977c55bbe20754ddf362e *man/vcf_sanity_check.Rd
49382fb17da7c4a51f07bd224c52a5f3 *tests/testthat.R
f3b5684b6fd9568d682568c670073e13 *tests/testthat/test-ploidy_est.R
2ddb03886ee8ceeebe8f80688014d176 *tests/testthat/test-prepare.R
b5e8005698b22e5d3de3ca1492dc2bc3 *tests/testthat/test-standardization.R
4ba7a3bf864ad978a1f0b4918daa65a0 *vignettes/Qploidy.Rmd
a981a3c36aa535a3a1ab78ddca2af5f6 *vignettes/fig1.jpg
bc45650dc22f87862568470617c08801 *vignettes/fig2.jpg
e3b20369ec170c2c0bba74f45343e1c7 *vignettes/fig3.jpg
622b4271c27f76b74028266ad8b66430 *vignettes/fig4.jpg
98ac341e3678626cf9216e7d870cc946 *vignettes/fig5.jpg
624d5cb8ed3f0069b9b7336587a8a065 *vignettes/fig6.jpg
77c945c546d21e0b5c42a7d067b7ea78 *vignettes/fig7.jpg
