915224333b99a09373326b74b04e8956 *DESCRIPTION
3e69ab216bb839aa511be06a274068a4 *NAMESPACE
21885c3ba2cf58f3a8d65ddfabdf663a *NEWS.md
036f83bdcc902f3198dea7c5e866de2b *R/Dbf4myc.R
46568f9af905fad16fa8915f0707fdc4 *R/MFAseq.R
e19a92b5b05b08010493276dce93f55c *R/TrepDF.R
658c6aa94291fdc5f39f3b2643d7173c *R/W303.R
2b37281ddb83c61d06570cad593b9f3b *R/W303_G2.R
ce015f07233fff3d0ceac6139dadc458 *R/W303_S.R
19a43b8a9584124d1076c686c44f9ab7 *R/W303norm.R
8bac328b45e8537f795a4c18a7aa9ed1 *R/calcTrep.R
a6eca81d072a479159296a41bfa892dc *R/compareRatios.R
7f58573d0aede55d4f01a74c361a12d8 *R/guide.R
336bdd9554351aba393cfb793b320853 *R/loadBed.R
7e3d7321cb8837843ca3f3160be43072 *R/makeGenome.R
0619cc28af4c8ebe0f1bd4e231109cd8 *R/makeLabels.R
aa02eb4000e311a68c05eacb64326aed *R/makeRatio.R
abe16511c5f44d3d20597a8bf7fba68e *R/normaliseRatio.R
8f6e136133df91341b6f82342dd7e901 *R/onAttach.R
c304a54e3eda0675ab05d57740c74eae *R/plotBed.R
394b7e7c19b539377c2ea5850f313387 *R/plotCoverage.R
b0cc2dd0b1328d354f8a55b2df86d376 *R/plotGenome.R
63c57742554eecaa25391aaa3910fc6e *R/plotRatio.R
0902ba9ee739d600405c3c8226abff1c *R/plotTrep.R
d6fdf442339bc8e83db155bf74a95ee3 *R/rmChr.R
0136c57f4493a33e0e57da92570a026f *R/rmOutliers.R
017e183cbd589e3a2779988dd6c25e52 *R/runGUI.R
9233915c70ec366fd5f554c772294a17 *R/sacCer3.R
7be1e3bb4e017cbd33e1c0751d385fa3 *R/smoothRatio.R
6a28ed8761f5dc1bad0a6ac9d2804bf8 *R/sortSeq.R
d537299e4057e66a6695c36b9a1b47d3 *R/syncSeq.R
3d2aaec31bc1cb1eb1c42bebf7acbdb8 *R/trimRatio.R
af13d92db7b265b200123c4967bb4454 *README.md
e7b7f38b3840b39bfd195ad00ddf8e02 *build/vignette.rds
63f3c3caf689cfe3e6f7aff25f93b214 *data/Dbf4myc.RData
4ef18b93957dd135343a7b062cb0e4bb *data/MFAseq.RData
1ed5d2c1f651dd319029115fc1fbd4f0 *data/TrepDF.RData
f20c2836a68030da7362799749cd4481 *data/W303.RData
d86158b02b078c3ec570c25acec0c716 *data/W303_G2.RData
6c014d2c63dd2e208790d94702f8e791 *data/W303_S.RData
a8efb6de7cb5d959e382bdc550a2a244 *data/W303norm.RData
4413d3c062f5f9ccbb96f441dc4fe035 *data/guide.RData
3cb6cea4489f3cc62f7796c9dfcc20cb *data/sacCer3.RData
434923ac24175ecf110d2aa9684741b4 *data/sortSeq.RData
8c01b9de9ed42a3ca5c083ba0f1c35f1 *data/syncSeq.RData
66557f109598baf891c33f92212b3fda *inst/doc/Repliscope.R
9285a7368740e95a6d8c55cb3fc9633e *inst/doc/Repliscope.Rmd
12e4f315f2cbed6961adae9a8cb50587 *inst/doc/Repliscope.html
779fd59778805d2d5bd1ec97c006bf94 *inst/extdata/W303_G2.bed
569a665f741d4747f808874125b8cf6b *inst/shinyApp/server.R
afaf3e77bd2feb411bd9f9035b443122 *inst/shinyApp/ui.R
47f311cb5b226f1dcdb8fe9683cbbb54 *inst/shinyApp/www/Repliscope.css
334a34fbe3d60cfeff534b0bb3fb5ec6 *inst/shinyApp/www/outline.png
10a3f0764e13eae2cee15ddd02edc610 *man/Dbf4myc.Rd
c3fb6034c638f22fad16572bfd1d2da1 *man/MFAseq.Rd
272204fcb61c047b02a576595f349185 *man/TrepDF.Rd
0cce4a4b52f1978dccc0b3969f11bc5b *man/W303.Rd
d3b55d01fac722f445fb13e4b51f5736 *man/W303_G2.Rd
49255d8234877c53563a917c983b9150 *man/W303_S.Rd
239e4a81944eb17b822ee95277bcccf6 *man/W303norm.Rd
e4622dc1ee836770a3fb995e4840c00c *man/calcTrep.Rd
df083534ae2b9470b873dd45b6de5724 *man/compareRatios.Rd
a93b9e56b0d2839b8603413b0bbfa654 *man/guide.Rd
96f729c0060c959d3ad5fb3905e5719b *man/loadBed.Rd
16a92cddfca297b2cc9990460a896962 *man/makeGenome.Rd
98bf57e37dc050f45df88fb0db8aa80c *man/makeLabels.Rd
9a4058f78b9576688857c80de09fbd31 *man/makeRatio.Rd
e048390d1235d183325ef46ae3fef6ee *man/normaliseRatio.Rd
6075dfa12f4a24f47630e81ea7412661 *man/plotBed.Rd
1c75ff65c546687f4542533734908e3b *man/plotCoverage.Rd
7dbc8fec40de1c4e87c1d51598c94cdd *man/plotGenome.Rd
bb9db9c9587388acd8d5ce6856abef1f *man/plotRatio.Rd
c1c56a54d5c8140e7d1f2ea9aebbf1f3 *man/plotTrep.Rd
23efb4ac63c563afb56b833a6d97ec39 *man/rmChr.Rd
44ce71eb5bd90a9daf0b78d090e7b129 *man/rmOutliers.Rd
0415cbcee2f39e44986bcbc4fa3111b8 *man/runGUI.Rd
3a4d713c36899c0244513c26feeda28a *man/sacCer3.Rd
3f4a998b4f893121d69b8edd5c908226 *man/smoothRatio.Rd
10c20c29d676017171f2f88b6eb16ade *man/sortSeq.Rd
991aa742e7c3d491ed0e5d2de1c1bd0d *man/syncSeq.Rd
e1c668f750b1b392323c339c94b32f3d *man/trimRatio.Rd
9285a7368740e95a6d8c55cb3fc9633e *vignettes/Repliscope.Rmd
334a34fbe3d60cfeff534b0bb3fb5ec6 *vignettes/flavours.png
ae650bbbed66fe75198dd2a1caf626ce *vignettes/plotBed.png
9962e67337e27034a78899907961fa1a *vignettes/plotCoverage.png
30d9960c08b565804463c3ab54c09a73 *vignettes/plotGenome.png
3c4d1952154f4db6cf9b2c4aebae3c50 *vignettes/plotRatio.png
