653b7eb7803bfd9183434dbd18abfa04 *DESCRIPTION
07d79d55c8a80772cd1a80b6cb1fe4e9 *NAMESPACE
f43282fec86c2a3dd2231b69326769ea *NEWS.md
d20d2ce086d0b30f9ce2b0a60a8aeee4 *R/AllClasses.R
82623d31bc7e0272bd22eab468a2c299 *R/AllGenerics.R
bc52ab889c9e257d4f23cc70dbe10aba *R/SpatialDDLS.R
a0a52118d3cd233b7d0e88d71c7fca9c *R/dnnModel.R
0aba3c1b2a2e2acced02218fc3cf9555 *R/evalMetrics.R
6d4ed0f16ca8245b9cf64905479d08aa *R/interGradientsDL.R
5b37b811d147b2eebff40483e7037c84 *R/loadData.R
bfaf932611614fe8549ecc352c3a574c *R/plotSpatialCoor.R
098331f3a4625bcaed7a7462e20e8b65 *R/simMixedSpots.R
fdc083cdfaf1b5d3c1487b4d85b53abc *R/simSingleCell.R
8bd4c3c8b5a5e434d0144315a1ddc990 *R/spatialClustering.R
5d64f168fda6e73e9d8d90833e031c58 *R/utils.R
3cb194e33169b34a79faaf7768f053f7 *README.md
aa5e5a2cbfaea3d9b6cdbe378ac48cee *build/partial.rdb
4b412807d6664255a7fe7087c28facda *build/vignette.rds
9d21d809809ac400c2e1b5514aeb8346 *inst/CITATION
4bcd2b156b2a11a82ec324f8360dea22 *inst/doc/realModelExample.Rmd
37a4ca8a9108869516efee9a0a7db16c *inst/doc/realModelExample.html
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ad6901cc6164adf9f47dbf1f12bd0305 *man/PropCellTypes-class.Rd
9914f09a8c8e48ed451f953aa4f3e752 *man/SpatialDDLS-Rpackage.Rd
9e37fec35dd448b5d9728ca7cf7cc6fe *man/SpatialDDLS-class.Rd
3bbc939d91afb482b0f4ba452b019784 *man/SpatialDDLS-package.Rd
ac0c0185b42fc9126abac74657211506 *man/ZinbParametersModel-class.Rd
96a6cc87d146f293f99189ef3b76aeba *man/barErrorPlot.Rd
95233f7f791807ebd6f4aa0453ee6de3 *man/barPlotCellTypes.Rd
53b857b2e453f1a6ee389e7b53256b2e *man/blandAltmanLehPlot.Rd
c0ea09d811a79ea70fcb4d51e009fa1d *man/calculateEvalMetrics.Rd
d2d32302b8d415b412a0d632f70fff52 *man/cell.names.Rd
80c6d6f35398f7e0dc3c9f5633773424 *man/cell.types.Rd
16fe8a6639d46a60c5d18a68fa7f2298 *man/corrExpPredPlot.Rd
ba50f0b103e76ee48444d5357f0d8f4f *man/createSpatialDDLSobject.Rd
fbf87532a9ca85ae6b90544ee6eb5c33 *man/deconv.spots.Rd
8baaa6bfed16b04c3d63f91bfb55b280 *man/deconvSpatialDDLS.Rd
2de9de4f976dd655ff844e440f1b4b83 *man/distErrorPlot.Rd
37e9c6ab13472d109264bd7b8e0ffcd4 *man/estimateZinbwaveParams.Rd
2787f7a3ba76dc63b20686a13d1238f9 *man/features.Rd
a56464e41df96380c47d38fc418c25c1 *man/figures/logo.png
4e1e7763d7ae189669bf06fc2226e128 *man/figures/summary.png
b6aabecc9928e8ee756386141b85171f *man/genMixedCellProp.Rd
86ca2482c258d55a8fd9a396280b7cd6 *man/getProbMatrix.Rd
0c40754bd6cf896c48a302e7a3ba5776 *man/installTFpython.Rd
6c8317742ba9bc804967cbc56d69db0e *man/interGradientsDL.Rd
c531b86e3af738cca2199c919fb7f53c *man/loadSTProfiles.Rd
01b9ecdfb11472527507ce85fd48660f *man/loadTrainedModelFromH5.Rd
7d7f831a13208eb6cddd490e7ffd0f9d *man/method.Rd
474114368c2546c084d1ccc17e5d9eb9 *man/mixed.profiles.Rd
d654c6c5bdd751e42f587ffa985eea7a *man/model.Rd
158de74f9d5b9ab2fc02415049d64f84 *man/plotDistances.Rd
a6fc054cf3db0ea59289c5e854e4712e *man/plotHeatmapGradsAgg.Rd
4c760d6365c78653854b19289ed53f46 *man/plotSpatialClustering.Rd
92062ffdb2300e35ec9090b0f439a8c7 *man/plotSpatialGeneExpr.Rd
fab286ac4c0d0cc99728249d430f7628 *man/plotSpatialProp.Rd
0cf162a21d6d3046d99869f0b2266cac *man/plotSpatialPropAll.Rd
2a8633b5a7e8d09f82fd1657e96671a7 *man/plotTrainingHistory.Rd
757beafea680db7f10f772c7d01cd6e3 *man/plots.Rd
ba2ed80361cbe37229b5f1ecc5abf186 *man/preparingToSave.Rd
88288cf3e821529be56999f739ec35de *man/prob.cell.types.Rd
815824e311cec5f4a20efc699bc88d9d *man/prob.matrix.Rd
a6f107229dba4f05340b0c10e21115ca *man/project.Rd
cfa7a70240580d27923a4a4a2e880d9f *man/saveRDS.Rd
7e278f962654d535d4b3f0bc7ed21cc3 *man/saveTrainedModelAsH5.Rd
4c3092f772e07d5bee9e2ae38d4c358d *man/set.Rd
362883c8f334a5dc19d3fc7342514c96 *man/set.list.Rd
6bf3add83019156c717bf7884429cd5e *man/showProbPlot.Rd
b56115c952e62f617192ab199b780834 *man/simMixedProfiles.Rd
49b93b16713e034ef51b119228ab5789 *man/simSCProfiles.Rd
8880d596ad3e482801283d8f6c77e5da *man/single.cell.real.Rd
f50667e4ada2f68b452d65aa322c42fa *man/single.cell.simul.Rd
104a181d736bdb6698a152c1478ce163 *man/spatial.experiments.Rd
3f1a4e771e5c418ca7d5ed7f31df294b *man/spatialPropClustering.Rd
8ff33f78f0bc14ce523d06f1382bcb6b *man/test.deconv.metrics.Rd
01e0c84b9fd4b0a3b1b696bcf8a2939d *man/test.metrics.Rd
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c8e82d2ace6500422e2681fdd7cb2ad3 *man/topGradientsCellType.Rd
5b87e04884c90d5bf006be6494d9d141 *man/trainDeconvModel.Rd
09a97e69660789ea5025f54ad3b92be0 *man/trained.model.Rd
6b0ed2edfec0a427c0996c00389e871a *man/training.history.Rd
ea978ccdc7951537ae5f8d7a50c8cd48 *man/zinb.params.Rd
280f2fffd34a6257682ad2a84cf19ad7 *man/zinbwave.model.Rd
141e8a933d2b6dc60ecf62bef5c4f1bc *tests/testdata/cellsMetadata.bad.tsv.gz
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8a18f37692ab4cc82d344b1c1b3846f2 *tests/testdata/sparse_data/barcodes.tsv
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7c0895c05c1265ff6cc0f7fc79ebc155 *tests/testdata/sparse_data/matrix.mtx
c1d54d932aa91ff66c2b918edec82e43 *tests/testthat.R
b68a37d5490151718e3e8807740a00d6 *tests/testthat/test_dnnModel.R
7aef493f84bee67c6404fda5b623b55d *tests/testthat/test_evalMetrics.R
db22b0008e5b1e09461bd65880ab3fa0 *tests/testthat/test_loadData.R
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4ed071a0a38d367fa958b486287dce87 *tests/testthat/test_simSingleCell.R
5de4164751f2f58d15b02fe0f824e42f *tests/testthat/test_utils.R
2bd7eb38f9169cf0822c13bc01e3e52b *vignettes/abserr-celltype-1.png
324b7e15f937d1c2ff7d0546c46baf3e *vignettes/abserr-celltype-sep-1.png
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7211d78c7e451f5d346ffb503672e4a9 *vignettes/distances-1.png
649517e89e1a8a50fd4d564f51d78ad1 *vignettes/knitr_rendering.R
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141b1f99379791482e8aab0ddae295e4 *vignettes/positive-grad-1.png
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4bcd2b156b2a11a82ec324f8360dea22 *vignettes/realModelExample.Rmd
fd6d7a3253da4a2b7777049e67957aa1 *vignettes/realModelExample.Rmd.orig
31b2e6b63e3e205088ebef9a14fc97b2 *vignettes/references.bib
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6fc7870e84e44cc099bcde144e245a92 *vignettes/top-genes-spatial-1.png
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39bfb234114347f381f83da6f65c7281 *vignettes/top-genes-spatial-5.png
ce67eea093cea81516b89b4851d17981 *vignettes/zscores-1.png
