41b34595675db35c4d76e1ca62603a5d *DESCRIPTION
ab074b63ac261f17d3b7d1fa507ef527 *LICENSE
133486ab7f902de82d1a7a89276c6c05 *NAMESPACE
6220a526f29491be675b12a5e24bf4e1 *NEWS.md
714bf1ed90c453853aecef90032d8b24 *R/0a_backbone.R
aa92be0dae1a7bbfa083d7eeff26b0ca *R/0b_modnet_pieces.R
61eea6176cb08ce3f2c21381f783596f *R/0c_backbone_lego.R
38b43bd726adbe8b5bfdc696348f655c *R/0d_backbones.R
c4bae76d67d224860f3fefb7979c06a9 *R/1_initialisation.R
d4d838e315163957e07d8fd135988535 *R/2_tf_network.R
e566ecc31e0ab38e60180b991c0ac611 *R/3_feature_network.R
8a5b99ac6e6f3e3f619b4f4f5dc64304 *R/4_kinetics.R
3e794ad11b491222029d7be648b547e7 *R/5_gold_standard.R
ebc2d293b91de4c1fdee78a90822c021 *R/6_simulation.R
dc918d27827aded3e4d40f6443c5597c *R/7_experiment.R
bcf7df205d726c023d5bbd003ec23fcd *R/8_convert.R
8d0984d70c0f9619da37eef9b71bbd3e *R/caching.R
a344f630869e0f3262197c087cf38e9f *R/colour_brighten.R
e4d268dde131165a2b5fc7ff36f86cbe *R/combine_models.R
e52a16d0f505e49ca6d04314c6673878 *R/data-example_model.R
7c1087561fce3086b9ec787687154e16 *R/data-realnet.R
777907dabb19a7f0419c21694b7e0bbe *R/dimred.R
f5719380f5e7c88d1a426e4c61db5dd3 *R/generate_dataset.R
cb4261bdf20cfde4adb52d81763afaa6 *R/generate_partitions.R
497a27c5325d930b8cb6c4edc409ee3b *R/ggforce_issue_273_workaround.R
7ac34ebd871582dd53190252411a8c62 *R/package.R
e1d6e534462c47946b96ceeda0f43998 *R/plotting.R
51b5b8e13fd77db94bb73c1e834d82bb *R/random_generators.R
7fde42e5d7a970719855e5eaa59aac7c *R/reexports.R
d061ae4058f0f9367f7874c12d5f075d *R/simtime_from_backbone.R
e8ca93588a27e9af680677d27f15c121 *R/timings.R
a0eea74d621c9699989501ce59278e77 *README.md
b9190a2a2e755d2b648b78d4f0c3290d *build/vignette.rds
94a4e1a797d30aea9433978d8bb33592 *data/example_model.rda
6ccb0ab640c17865997eff2c93bb22d8 *data/realcounts.rda
577838d68401ca076b3f6c8a877c8754 *data/realnets.rda
394e967551d34e8a1c473fe0db09cb08 *inst/CITATION
161a4ed8eab4b792ceb7f6fff4a39853 *inst/doc/getting_started.html
7b1f5d1ef3f996bb3b77a1d8c3705439 *inst/doc/getting_started.html.asis
ebf63cf2baa805ef4a4cabcceb95f0ba *inst/doc/installation.html
c213465810c96cc80206e4f6d7701d2c *inst/doc/installation.html.asis
c1f654805bf97c7e791075ee70a0e546 *man/backbone.Rd
87230c875a90d13740cafdc2bc8b4279 *man/backbone_models.Rd
60bb0850731b7a222f1459f0476db0fe *man/bblego.Rd
231eb475683efe8454706ca973a71d92 *man/combine_models.Rd
a909c6840923c3c85b339c116fe59f3d *man/convert.Rd
995a56f829b2387b0781873c761af367 *man/dyngen.Rd
733e7922b738e4995b6a58c969c8dfdd *man/example_model.Rd
93b3fb01daee21a88f980b3e38a1ae77 *man/figures/logo.png
f7b51aa62192fad804f97b59d2115beb *man/figures/overview.png
0418e99dcd86e1269c1272bd500d1e30 *man/generate_cells.Rd
8afe5896b08b45b41733ac844220b24c *man/generate_dataset.Rd
5fc915e85349e12410f036f213315aeb *man/generate_experiment.Rd
f286d8da436cdb18407b7426fcb831f1 *man/generate_feature_network.Rd
334d2bf4e56468b64fedccc5714fab64 *man/generate_gold_standard.Rd
4b87d0f78ebd5b5a7646ae6b13bcca30 *man/generate_kinetics.Rd
d878ea1a8f1f60df62921995760ad1f1 *man/generate_tf_network.Rd
3a221052140edec9bbc0ca0ac130436c *man/get_timings.Rd
b31291cff0760142573f4cbcd45b95f2 *man/initialise_model.Rd
1c124ff83831adf37390c0fa118165c6 *man/kinetics_noise.Rd
92e966371a9059cb452c3d92facf97e2 *man/plot_backbone_modulenet.Rd
56d7293b237926674e08e2cddfb3335a *man/plot_backbone_statenet.Rd
ee321c7c437bdf0230122ad9c24f9a0a *man/plot_experiment_dimred.Rd
f07615e0c30f4d3e3a8eba48190fdcde *man/plot_feature_network.Rd
912e6f8f1a2dde2aa2297a99b7d86848 *man/plot_gold_expression.Rd
d6303f38f3fab7856c32f9396abdbc4b *man/plot_gold_mappings.Rd
713b48d04eb5498c94085340f2221ec1 *man/plot_gold_simulations.Rd
b90ce35ad19a6a99e7769f953f9db7df *man/plot_simulation_expression.Rd
6c744b0c9b9eda34f49dfdfba625f080 *man/plot_simulations.Rd
f66b8d8694057b0a60bb3471ef0d1f06 *man/plot_summary.Rd
cd8d87806cb96cf56dc1537962d26c46 *man/realcounts.Rd
9e5765959277718ec29aba4ae845079a *man/realnets.Rd
4354ce22b9a6730ca0b015ca345f5aa9 *man/reexports.Rd
ab58a0bb842111b125b50b0618be43f5 *man/rnorm_bounded.Rd
7dbb035de7c4dbfa57227dd3be386bb5 *man/runif_subrange.Rd
038cbc1bf94ed0adf5f1d5009676a5ac *man/simtime_from_backbone.Rd
13b0f30e310026310b906e753fcd2b34 *tests/testthat.R
5963ac4d959ecb6d39f33226d4758897 *tests/testthat/7_experiment.R
1514db01c1532972b38aed3b1f9964e5 *tests/testthat/test-1_initialisation.R
5cb9437d51f06bf58faa4fc625837d62 *tests/testthat/test-2_backbone.R
df5c4c6695aef03a991d85c43af6246f *tests/testthat/test-combine_models.R
71fde529c34c080e01f5d136ff152b0a *tests/testthat/test-generate_dataset.R
a1b747eb97470f253bc6015e714454f5 *tests/testthat/test-generate_partitions.R
7b1f5d1ef3f996bb3b77a1d8c3705439 *vignettes/getting_started.html.asis
c213465810c96cc80206e4f6d7701d2c *vignettes/installation.html.asis
