f629138d82c9551cda06053f6ba0fdc6 *DESCRIPTION
c5685325ee553cd59cb9947b1add8c02 *NAMESPACE
e333e2896422d34c590f27ce0611fc5e *NEWS.md
02ce041d342d71b6113d255d58df7f11 *R/RcppExports.R
6cc188a03bb04eedf560bb84dbe8b328 *R/add_drop.R
fced789d6a0cb4ca10852f986e8e51dc *R/build_map_by_steps.R
68b017243a15205bbbb2f3dfceca365a *R/cache_twopts.R
f4814f3ae16359719084d559403ab59c *R/calc_genoprob.R
59edb38958ceba07f06122760a987755 *R/calc_genoprob_dist.R
e2220b36925e8f1f6b41bb7e804850ea *R/calc_genoprob_error.R
c42ff53ff021f33c656a1074fd642134 *R/calc_genoprob_single_parent.R
ddb5a732e4839d8c19acf65c91effdcb *R/check_phase_configurations.R
1db0a4c9d4b882c483a5cac16199e1a1 *R/cross_simulate.R
5841147f8739cc1b6f2812a8426ff60c *R/data.R
069d30e355da66969c8995972d5a6f3e *R/eliminate_redundant.R
6419f1498f2067be4a8726029be653fa *R/est_map_hmm.R
62c64f3604acaedbcf8b9423fd40d6d1 *R/export_map_list.R
c89c164e85fc72305f410160da9a6cfc *R/export_qtlpoly.R
1c64f1ce1e4790bd9d9a5495b4ea0a2f *R/filters.R
6f7d40dec8ab81a59aa877ee07248fa7 *R/find_blocks.R
de713013841c05a086d31c2d5b50d03d *R/get_counts.R
ef8d3aacf93a29b3d57e3a38b86d6f9b *R/get_counts_from_web.R
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acdc89eac86ad05d7be9b26bafc50d92 *R/import_from_polymapR.R
6514f863106dabca33b99f94d39d57e0 *R/import_from_updog.R
0b45f5707b196cbad10f87de2eb15ee9 *R/loglike_hmm.R
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05cdaa1f40273c8ce5f10d9da0cf6122 *R/make_seq.R
42e3bbeebd5f4f013179d2a30784511e *R/marker_info.R
47d266ab7a27b09ba53ca56618c50080 *R/mds.R
c25d0398149dbd4245b9ac5566cffd18 *R/merge_maps.R
8167fd226b88f81afea5aac0e7c369a0 *R/pairwise_rf.R
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c5ee1fc5fdb2f96dca6d87c0d51530fd *R/plot_map_list.R
9ca385edfc0119ab8ebc23b7271ad839 *R/plot_progeny_dosage_change.R
67dc763edba66317b45a07b3eb0f25de *R/preferential_pairing.R
38366e54250df38da567340a0038c7ba *R/prior_dist_hmm.R
e6fbccdb9bba9dc662484567dea17e6f *R/read_fitpoly.R
8d7ef9c531ad18b5f93ca8641cfc083b *R/read_mappoly.R
fd970b680f51703f3011013fa35607f9 *R/read_mappoly_csv.R
bf40a6619c9db989bb7d43496af0bda8 *R/read_mappoly_prob.R
d3e8c6055dccf09cf9e9f3577dc36754 *R/read_mappoly_vcf.R
a016721047931e83b96393b6b684713b *R/reest_map_error.R
526f226423c112d2729a62ce66e5a847 *R/reestimate_map.R
be4f0ced8e6db796dd19a509daea30d0 *R/rf_list_to_matrix.R
6545145f5283ed92950c850406961332 *R/segreg_poly.R
87af09ae0118496f2f32eba1fa3af007 *R/sim_homologous.R
4a3efda86b102eeeb96cfa1def29ea84 *R/simulation_utils.R
67e0510a4de853f09e310c7d576d03eb *R/single_map_hmm.R
585d580d96496c5417c97c3010d5a89e *R/single_paprent_single_phase_hmm.R
deae7bc432cd723da5ec2a151ec5a3ec *R/split_and_rephase.R
6dacda2a2b7ce19d9c1e4c81e2e6dd73 *R/sysdata.rda
cf6444c9dd821ca4eb6bd783ec642c90 *R/utils.R
a8e6c744808b2e962ebfc6459c260073 *R/zzz.R
0a657053ffa151fb70f52d6e7772bccc *README.md
d54042561b90aafd8a9a202ea63e1e4b *build/partial.rdb
c9d67cace6ec4e03f68ef4ba3f780706 *build/vignette.rds
1512a572b69b02594690f15ce55561ee *data/datalist
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4a436eb50efe39a01c8f7edf47326302 *inst/CITATION
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6c947140efe1fbb7f2d479e96f75b153 *inst/doc/mappoly_startguide.html
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e76382618523b86db5a2bc7b1e75e051 *man/est_full_hmm_with_prior_prob.Rd
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9348f8559e595c7e635dd4c90bcb4ffe *man/get_dosage_type.Rd
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ad436088b8b03eecf51bc445d10ab31c *vignettes/mappoly_startguide.Rmd
