b0ebc9364e2eacc04c6588fa3e3e128e *DESCRIPTION
df08697146d20c271eeb8ae45a4268b5 *NAMESPACE
e9ffafba37a4bbfc3f5a0e8f7fb027d7 *NEWS.md
2c68eaef2e4768f5b13a0760ef20a528 *R/absolute_path.R
1431e0af32f5a0e7537732b68968a356 *R/bi_contents.R
2a1649a6831e43ba6ae316e8b135d0c9 *R/bi_dim_len.R
3764dae1bfc39d314aa98a84c63de01c *R/bi_file_summary.R
165cc39fe8075d7835993eafb0d3a9ff *R/bi_model.R
aa373d78adbe1b5055fa3bc86c488b9e *R/bi_open.R
364157e6738063bc3f010e135d468f58 *R/bi_read.R
a00c34416f0897abea35015fb09832b4 *R/bi_write.R
ae23aba029a1da5a47841e751f1ff649 *R/extract_sample.R
ac4974bbb2c7bcb4c248563264429bb2 *R/flatten.r
3f4c0ba19303d56a67c1843ad25c0ebb *R/generate_dataset.R
17f476f535502f881fa205e03a3002be *R/get_traces.R
7eb9ac0bfbe61c7a03869a2f1f6ec9e6 *R/installed_libbi_version.r
2ebea1f17a34cc156f7a9abee5632116 *R/libbi.R
d6bd9b4a74a410ae1b3e68eba913f2e7 *R/locate_libbi.r
4f24efc9ceab7e672790adbd5dbfda0b *R/options.R
956c3a3e0dea8fb4721731fdc3e2fb88 *R/rbi-package.R
82bc1a01440f923c6b2148e5a3b5d5e8 *README.md
27bfd711c9eff68a04b6e3a90d3ef661 *build/vignette.rds
32466cf74da6cb001f94e4f299511d3e *demo/00Index
2db17b6435c7e6e1ee886157cc151bab *demo/PZ_PMMH.R
547ab5b73a9cb7e1a3bd119b4a899cca *demo/PZ_SMC2.R
d510fa73d2ffd27058e1289ef07a79b7 *demo/PZ_filtering.R
2ea35cc1f2ab1a99cfb798d63ab0b654 *demo/PZ_generate_dataset.R
bff32eb91a7bcd812730c912aa3101db *inst/PZ.bi
3698f600c59f2c78c59bb71b48d5f717 *inst/SIR.bi
e294400b1937c9baa2ee76a9c9874a37 *inst/doc/idd_models.R
8ca9c1a8f58dc06ca2067ba54103cc5f *inst/doc/idd_models.Rmd
18820c9c65a472858d9dbbb820d1b335 *inst/doc/idd_models.html
62108a8e8e809d604f4acf82404ed555 *inst/doc/rbi.R
fbcc89abf921ec6926705bcb9854d25c *inst/doc/rbi.Rmd
e958cfb786ccf73055375e01862b4f08 *inst/doc/rbi.html
fbc6b55f748c9105682cfb394c86c4da *inst/example_dataset.nc
102321827823eb0b1f148b0a8d4ff106 *inst/example_output.nc
480e615e21308b517fe9535bbe7aed11 *man/Equals.bi_model.Rd
13579cb05cfe03485259e737765acd4b *man/Extract.bi_model.Rd
0ec9e508aa8f13e4ce1a0457cf5b5070 *man/Extract_assign.bi_model.Rd
def86244ca9d0a88fbcde818eeec7327 *man/Unequals.bi_model.Rd
3fd33ac9e8ee2b87434c157bb2b9afe1 *man/absolute_path.Rd
2d5bf92ba6a24a1f5f8a7c199aaa69f8 *man/add_block.Rd
f78b561e666fefb84554af9b428281d8 *man/assert_files.Rd
9c085af2c6556043e729a0ef217e6149 *man/attach_data.Rd
a98d2e963944f30ee1b4991f6bc8c886 *man/bi_contents.Rd
524b09c551d89394c8a7c13573e0f5e7 *man/bi_dim_len.Rd
fb2fafc7f28b106274350a78d7646eb0 *man/bi_file_summary.Rd
49ef34b204aa65f2b14c5bb6207dd365 *man/bi_generate_dataset.Rd
576774fde5592d3d95cd100e8703981d *man/bi_model.Rd
8dec62643d1771b63d3eec313fde9155 *man/bi_open.Rd
9f48d3200be151113e52de46d15b04f0 *man/bi_read.Rd
4e4066b7f4042ceaa6e5becaabe2ee5a *man/bi_write.Rd
e82e0265e7c2f1f2c5d9ac4e822e0c4d *man/check_sparse_var.Rd
90e6a91eb1d144b063a93f97ce7721df *man/clean_model.Rd
544375ce46f4a47c51df11d7dca17f0d *man/create_coord_var.Rd
d0841ab7db564e6c472d7262f77f46dc *man/create_working_folder.Rd
159cc94c170e1cbbc36e31124e21ea72 *man/enable_outputs.Rd
2f17a8d8c10d283ab6bcc531b30229db *man/extract_sample.Rd
9b1bc2a526ade96e15bbc7f4e279c343 *man/filter.Rd
6f3d93e09df9f54db6bc219aafa218a5 *man/find_block.Rd
d93882bed53ecf302bb867e0f440d2ee *man/fix.Rd
ec8704540f08a0e29ed0584af614c467 *man/flatten.Rd
cf79ffdf8c08f5737bca0d28b825ea44 *man/generate_dataset.Rd
b0e631a8d2b5a2b0be99f01cd234a28b *man/get_block.Rd
63cf37740491f6faecdd699c60b5e45c *man/get_const.Rd
782172a30d9da9a503a5019c5a61f4dd *man/get_dims.Rd
5abc829f7485189fad2dd7ff8304624c *man/get_name.Rd
7f3a81dc09278c2ae04272e9e6683e38 *man/get_traces.Rd
7d62bad4588aedbcc97095c8c0c62426 *man/insert_lines.Rd
865fdb2f04d6171371902421521994ac *man/installed_libbi_version.Rd
2a1282f77cdcfa8b3bdb2a30a4b55f8c *man/is_empty.Rd
00cb22fb72120e177b3678e90ba476b3 *man/join.Rd
9174e2aa76dc9560340b4aab4338a456 *man/libbi.Rd
1d9f8e49b62fa842e7b1e48287708832 *man/locate_libbi.Rd
fbb1406608810682f7bb857fb13de2d4 *man/logLik.Rd
31772933a006773f3bffaed470e4d9ea *man/optimise.Rd
dbf75eb9614fa19be7924d97ac765cf9 *man/option_list.Rd
b1cb0a2b36257d5b81301ebd78d5e6d2 *man/option_string.Rd
43ffcdff08f2a611ba5a632ee46a8a04 *man/predict.Rd
45e1691292239125e63198196a26c2ab *man/print.Rd
ed8c908eac1a7a61f1f2cf905e91255a *man/print_log.Rd
ca7d651c571d1452c890d0bd032979b0 *man/propose_prior.Rd
663b9ea31a8c143e61b16b4188187ec9 *man/read_libbi.Rd
34cbee34c99d6b97dffd0560b76665ab *man/remove_lines.Rd
cad40d5361b0dcd968994e4d71ee94db *man/remove_vars.Rd
e54a23db7889cc92036da5ee73028490 *man/replace_all.Rd
d666e3c54a971d8f1d7c84b9bfde9bea *man/rewrite.Rd
c0625bce80f5965a2e48da064b694184 *man/run.Rd
045014d9f52a1015d5b708634c0b3e97 *man/sample.Rd
277a8fda0be93b499417ace2a2441e9f *man/sample_obs.Rd
15899e21df22330585e9ce6381e7c4a9 *man/save_libbi.Rd
e72962af61f203ad55f85721bfcfe6ba *man/set_name.Rd
748c64a6277bc989e02e3d9789eaedf2 *man/simulate.Rd
c00a3792ee23efbead05fc77244ad9d9 *man/summary.Rd
f4d8948af52b8213ae1b8c22064def8f *man/to_input.Rd
9eb7b607bdafff7a623c85f6d6b3d4b3 *man/update.Rd
4d2929db554c045a04f2409a3753bc90 *man/var_names.Rd
da36115eccd9581f3a3459567d98bb05 *man/write_model.Rd
586b6396985ea9819f2e19f761ab81c7 *tests/testthat.R
4fceeb8a010c227e94862a9e34fed23c *tests/testthat/test-bi-model.r
0eada152cbf1918b3b55d07de733bb74 *tests/testthat/test-io.r
9945885ba0feda36a2f6a636541e38bc *tests/testthat/test-libbi.r
6fd6415f8a38f5a35d2984b67256b19d *tests/testthat/test-samples.r
79e053e3806df65d4ec58dd33f2d46b4 *vignettes/bi/SIR_deter.bi
6da68a81bccb3f694bc396b476494ac9 *vignettes/bi/SIR_deter_prev.bi
b440b7a6cbd7a8216796e00e2292e34e *vignettes/bi/SIR_stoch_SDE.bi
b87a041084825998406821a65395739d *vignettes/bi/SIR_stoch_jump.bi
8ca9c1a8f58dc06ca2067ba54103cc5f *vignettes/idd_models.Rmd
fbcc89abf921ec6926705bcb9854d25c *vignettes/rbi.Rmd
