b73f722aaa21fb4c0020e114c8946110 *DESCRIPTION
4c1d2221ce775db26b977114846582f4 *NAMESPACE
f0076e505635c4b2daba89b6fffdcef5 *NEWS.md
6de01920a6f4209f1bd5cbeb72aa77eb *R/EMMA.R
bba65aa09d1c7eedaed80ab3115a9986 *R/GWASHelp.R
3bde1db0406eb688f81873d64aa8c196 *R/RcppExports.R
d6ecb628ce4e023c27fe9dcf08b00ef5 *R/chkFuncs.R
99669221c4871cd1a38bfcd666aa6077 *R/codeMarkers.R
147774336ce1a762f5b1298cf56417a4 *R/createGData.R
c8c3fef4775db472df7bb0e7a5be9b22 *R/createGWAS.R
b736f4d8c04834938ef33f517987c2d9 *R/data.R
3255546e7e0cb04d272afed1f1f7f6de *R/fastGLS.R
da53087267d1aea46578fd91f45b653f *R/geneticMapPlot.R
acc0d7143bbc6a87a4bc81cc757ff115 *R/kinship.R
667408d53526ff056e88fd88d5cdef5f *R/manhattanPlot.R
1e5147f41dd8f5e56d2fac9940123c5f *R/qqPlot.R
0a60d5f013d1f1510009742df40fdfc7 *R/qtlPlot.R
fe28f9e1a04b378e892c1184fbcec78b *R/readPlink.R
d9c8fd17ae841d39c7f170bb8707841e *R/readVcf.R
f596a371f6b90f97af13422b7d9f284f *R/runSingleTraitGwas.R
e526433ac44841877679a590bb6fc255 *R/statgenGWAS.R
ba0b6ffaa3ddb73bc429556eaaed9acd *R/utils.R
5692e3a4c30c1979ae6cbde404a84b42 *R/zzz.R
d51a8aa140e60c55a0d47b420206e044 *README.md
9d40159f50a5fc9949cbfe95a2884126 *build/partial.rdb
3024b724e2ec80a24ff2a64719c99af5 *build/vignette.rds
6eeeb1e94b312355adcab7f36696cc0f *cleanup
61d9b1d1c66c95e872111d0700fb415b *configure
4e05f0ef4e05376b002e3c03a72dafa2 *configure.ac
c87fdc93e6aa814fdcd7b2443313917b *data/dropsMap.rda
75285487b07fbf1e8fc01befc20f4a11 *data/dropsMarkers.rda
33efea5d9a898044b07d58152c3d2625 *data/dropsPheno.rda
abd2b955f70303ec30c8b44c3f932e6c *inst/doc/GWAS.R
4e819c6d36fbf25efd11d64dd44602df *inst/doc/GWAS.Rmd
521f2c7ce560efbc53e4cbc5f2a9b45a *inst/doc/GWAS.html
9eb5f003b27c7cd79f717bd30b7db5ea *inst/extdata/testData.RData
ea98b902fe469c5a6b6e1a28fb08e3d6 *inst/java/beagle.jar
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result1_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result2_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/result3_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM1_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM2_GWARes_ph1
e733664b8b1b4009f7843cad82ed5e34 *inst/tinytest/resultM3_GWARes_ph1
c71d65b5318bdad87c5682afcb20d907 *inst/tinytest/stg0_GWARes_ph1
5a7b6ee90f48d071d66410ef2d320d7e *inst/tinytest/stg1_GWARes_ph2
e805c9002d7c5c8ad0a1a163c1b296be *inst/tinytest/stgM0_GWARes_ph1
90fb81c13d0b8d0e85a73b5b7ddaeafa *inst/tinytest/stgM1_GWARes_ph2
df8bf1dd316959e239c52427ff5aa7af *inst/tinytest/test_GWAS.R
0c9355dbf23b9cc411716f0c40750428 *inst/tinytest/test_STG.R
07bf70de86f30da07a434a57f7f40fc5 *inst/tinytest/test_STGHelper.R
271b267f5db31f3f8df7a05e099882a4 *inst/tinytest/test_STGoptions.R
b842765d0b6cb05379de1b29a533987e *inst/tinytest/test_chkFuncs.R
1684eeddb2d50c2390db768a57b52fe7 *inst/tinytest/test_codeMarkers.R
0539257f3aba56ecd9cdba96901c6b5f *inst/tinytest/test_gData.R
84f0483e27db58f6c07b11c2fe08ee14 *inst/tinytest/test_kinship.R
9fd98da5059514a659054f6eeedbb9f8 *inst/tinytest/test_plots.R
ed53a7ce3d5583c3993d3c2426748ae0 *inst/tinytest/test_readVcf.R
017db8436ca6774844acf4fb668a8d6b *inst/tinytest/test_utils.R
143d53f8c8ff2740ce125560ed322711 *inst/tinytest/testdata.rda
6f14213ffbe8b3d364d8304157ce2b4c *java/README
d55a3f59d0cb2fdf54acbd9a3d5276b2 *man/codeMarkers.Rd
75dc8429c59802ef56507ddfcc366f34 *man/dropsData.Rd
c2bac4ee9d26267da3b2b1ede6ef6d93 *man/figures/README-manhattanStg-1.png
003315eae181b553e0c3446215a123e8 *man/figures/README-qqStg-1.png
d0c95b66f60eddf73c0a04cc897859c3 *man/figures/README-qtlStgNorm-1.png
efb2f78987ab544e19cd2c52b8799665 *man/gData.Rd
ad1472caa91cda093ff57e6783417892 *man/kinship.Rd
880c5c68f220129e86694661c91c002f *man/plot.GWAS.Rd
5ae388fbd2cec3267abc39707ab5e7cc *man/plot.gData.Rd
495d08bae2cb6659a02f1bca6e67c6b5 *man/readPLINK.Rd
6f3b3e4967e309f10174b171896fd405 *man/readVcf.Rd
8cf0918d7bd03db61eab847b6ae09daa *man/runSingleTraitGwas.Rd
b2461a3325600fd0d212f19a651748e7 *man/statgenGWAS-package.Rd
f173723f573504cf7ad8352247ec99d8 *man/summary.GWAS.Rd
81bbdea2a090d3b735e0e216e5e6edc0 *man/summary.gData.Rd
9984a9660f1bfdbb1437242cca94781d *src/EMMA.cpp
9661e50f38957d51d405bae71fcce036 *src/Makevars.in
1f1c9459bfd04b8aadd22a2be152d203 *src/Makevars.win
d8150e6fb3ac320b80f2f750b640ecf1 *src/RcppExports.cpp
29f32769d6164e1c1d4e1506528bf4f8 *src/codeCharMarkers.cpp
8230bea2a40eb150c44b5d4da288c83b *src/fastGLS.cpp
768c72ab56ca4f806be7293665e35385 *src/getThr.cpp
dca120fb5d1c68c557fbd57ebd7f021c *src/getThr.h
7e6da955339718108bd7a7d09c792cd2 *src/kinship.cpp
50cd7123f8523549c50be63ecf8f1973 *src/utils.cpp
d4bb3c2ba73a134c9155377452bca6ca *tests/tinytest.R
4e819c6d36fbf25efd11d64dd44602df *vignettes/GWAS.Rmd
71e9723a767490c1442b8b4e83b43403 *vignettes/bibliography.bib
