CRAN Package Check Results for Package ALDEx3

Last updated on 2026-08-02 04:48:55 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.2.0	85.04	304.60	389.64	ERROR
r-devel-linux-x86_64-debian-gcc	1.2.0	91.97	211.36	303.33	ERROR
r-devel-linux-x86_64-fedora-clang	1.2.0	57.00	257.26	314.26	ERROR
r-devel-linux-x86_64-fedora-gcc	1.2.0	86.00	199.21	285.21	ERROR
r-devel-windows-x86_64	1.2.0	101.00	325.00	426.00	ERROR
r-patched-linux-x86_64	1.2.0	113.48	300.64	414.12	OK
r-release-linux-x86_64	1.2.0	120.26	302.33	422.59	OK
r-release-macos-arm64	1.2.0	21.00	82.00	103.00	OK
r-release-macos-x86_64	1.2.0	70.00	429.00	499.00	OK
r-release-windows-x86_64	1.2.0	100.00	326.00	426.00	OK
r-oldrel-macos-arm64	1.2.0	21.00	81.00	102.00	OK
r-oldrel-macos-x86_64	1.2.0	70.00	425.00	495.00	OK
r-oldrel-windows-x86_64	1.2.0	139.00	455.00	594.00	OK

Check Details

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [143s/195s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [92s/111s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: for new files in some other directories
Result: NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0c3w3J’ ‘~/tmp/scratch/Rtmp0elMZF’ ‘~/tmp/scratch/Rtmp0qvyBE’ ‘~/tmp/scratch/Rtmp23B8Ee’ ‘~/tmp/scratch/Rtmp2WOZzN’ ‘~/tmp/scratch/Rtmp2zIxVG’ ‘~/tmp/scratch/Rtmp3AvoEE’ ‘~/tmp/scratch/Rtmp3df2li’ ‘~/tmp/scratch/Rtmp3kkH8b’ ‘~/tmp/scratch/Rtmp3znJFx’ ‘~/tmp/scratch/Rtmp536XlE’ ‘~/tmp/scratch/Rtmp5OB4mY’ ‘~/tmp/scratch/Rtmp6yJ6kx’ ‘~/tmp/scratch/Rtmp7BViSy’ ‘~/tmp/scratch/Rtmp7eIUm9’ ‘~/tmp/scratch/Rtmp7kT7th’ ‘~/tmp/scratch/Rtmp86V5Av’ ‘~/tmp/scratch/Rtmp8CKfz6’ ‘~/tmp/scratch/Rtmp9SmMNe’ ‘~/tmp/scratch/RtmpAFEdiU’ ‘~/tmp/scratch/RtmpAQW5uz’ ‘~/tmp/scratch/RtmpBMFgsk’ ‘~/tmp/scratch/RtmpCQwp7h’ ‘~/tmp/scratch/RtmpCzQn2G’ ‘~/tmp/scratch/RtmpDMtl8f’ ‘~/tmp/scratch/RtmpDquaOg’ ‘~/tmp/scratch/RtmpEEFptN’ ‘~/tmp/scratch/RtmpELvQT0’ ‘~/tmp/scratch/RtmpEYAmVY’ ‘~/tmp/scratch/RtmpFQBwQz’ ‘~/tmp/scratch/RtmpGPH8vA’ ‘~/tmp/scratch/RtmpGZpAb5’ ‘~/tmp/scratch/RtmpGv6erW’ ‘~/tmp/scratch/RtmpH1rCzG’ ‘~/tmp/scratch/RtmpH1uhPf’ 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‘~/tmp/scratch/RtmpXai2hC’ ‘~/tmp/scratch/RtmpXptnYc’ ‘~/tmp/scratch/RtmpXtLKZP’ ‘~/tmp/scratch/RtmpXyvzRH’ ‘~/tmp/scratch/RtmpYut2Xg’ ‘~/tmp/scratch/RtmpZ1pdwA’ ‘~/tmp/scratch/RtmpZTfJoK’ ‘~/tmp/scratch/RtmpamsKup’ ‘~/tmp/scratch/Rtmpb0Eghy’ ‘~/tmp/scratch/RtmpbKr2ng’ ‘~/tmp/scratch/RtmpbggINd’ ‘~/tmp/scratch/RtmpcPIP95’ ‘~/tmp/scratch/RtmpcmP6Al’ ‘~/tmp/scratch/RtmpcwPCiT’ ‘~/tmp/scratch/Rtmpd2oWib’ ‘~/tmp/scratch/RtmpdhWOdx’ ‘~/tmp/scratch/Rtmpdnd4hv’ ‘~/tmp/scratch/Rtmpdt0tXY’ ‘~/tmp/scratch/RtmpeHk511’ ‘~/tmp/scratch/RtmpeROB5x’ ‘~/tmp/scratch/RtmpeWxWYj’ ‘~/tmp/scratch/RtmpfFp7wU’ ‘~/tmp/scratch/RtmpfcOrnC’ ‘~/tmp/scratch/Rtmpg2uy11’ ‘~/tmp/scratch/RtmpgRIXhf’ ‘~/tmp/scratch/RtmpgUUdmw’ ‘~/tmp/scratch/RtmpgeiyFr’ ‘~/tmp/scratch/RtmphD3jhY’ ‘~/tmp/scratch/RtmphPA80k’ ‘~/tmp/scratch/RtmphcyTkU’ ‘~/tmp/scratch/RtmphgrfBe’ ‘~/tmp/scratch/RtmphuOpwt’ ‘~/tmp/scratch/RtmpiN416V’ ‘~/tmp/scratch/RtmpivNa6b’ ‘~/tmp/scratch/RtmpixQzvQ’ ‘~/tmp/scratch/Rtmpj4Qtph’ ‘~/tmp/scratch/Rtmpj9EvuV’ ‘~/tmp/scratch/RtmpjN5j7h’ ‘~/tmp/scratch/RtmpjdLFqJ’ ‘~/tmp/scratch/RtmpjePuL0’ ‘~/tmp/scratch/RtmpjqaChr’ ‘~/tmp/scratch/Rtmpk0sgxW’ ‘~/tmp/scratch/RtmpkA0Nu9’ ‘~/tmp/scratch/RtmpkEtuqD’ ‘~/tmp/scratch/RtmplDdIjv’ ‘~/tmp/scratch/Rtmpma5P9I’ ‘~/tmp/scratch/RtmpmbPwXh’ ‘~/tmp/scratch/Rtmpo89mTU’ ‘~/tmp/scratch/Rtmpo90RsH’ ‘~/tmp/scratch/RtmpoOENJp’ ‘~/tmp/scratch/RtmpobIGFp’ ‘~/tmp/scratch/RtmppBFzp6’ ‘~/tmp/scratch/Rtmppl6iwl’ ‘~/tmp/scratch/Rtmpq0pUmt’ ‘~/tmp/scratch/Rtmpqccjjc’ ‘~/tmp/scratch/RtmpqfCkbD’ ‘~/tmp/scratch/Rtmpr6Bs2H’ ‘~/tmp/scratch/RtmprKg392’ ‘~/tmp/scratch/RtmprirzXf’ ‘~/tmp/scratch/Rtmpritcen’ ‘~/tmp/scratch/RtmprqZpp6’ ‘~/tmp/scratch/RtmpsKbhg9’ ‘~/tmp/scratch/RtmpsaBts1’ ‘~/tmp/scratch/RtmpskAMCo’ ‘~/tmp/scratch/RtmpstMfW6’ ‘~/tmp/scratch/RtmptDDVVu’ ‘~/tmp/scratch/RtmptEZxol’ ‘~/tmp/scratch/RtmptQZMqy’ ‘~/tmp/scratch/RtmptTcHwe’ ‘~/tmp/scratch/RtmptYfI5c’ ‘~/tmp/scratch/RtmptZ3aqd’ ‘~/tmp/scratch/RtmptuYEI0’ ‘~/tmp/scratch/RtmpuByyZK’ ‘~/tmp/scratch/Rtmpulr4uT’ ‘~/tmp/scratch/RtmpvL2sb9’ ‘~/tmp/scratch/Rtmpvl4yWo’ ‘~/tmp/scratch/RtmpvrPEsD’ ‘~/tmp/scratch/RtmpwPwxPx’ ‘~/tmp/scratch/RtmpxhJW3F’ ‘~/tmp/scratch/RtmpyQvdL1’ ‘~/tmp/scratch/RtmpyS1Aer’ ‘~/tmp/scratch/RtmpyaK6DI’ ‘~/tmp/scratch/RtmpyjZyy9’ ‘~/tmp/scratch/Rtmpz1FiXc’ ‘~/tmp/scratch/Rtmpz8fbVh’ ‘~/tmp/scratch/RtmpzkFCfk’ ‘~/tmp/scratch/xvfb-run.0yr5VR’ ‘~/tmp/scratch/xvfb-run.1RnOO7’ ‘~/tmp/scratch/xvfb-run.1u9XcQ’ ‘~/tmp/scratch/xvfb-run.3Z27bV’ ‘~/tmp/scratch/xvfb-run.3cj9K2’ ‘~/tmp/scratch/xvfb-run.41adY1’ ‘~/tmp/scratch/xvfb-run.4ZlBQR’ ‘~/tmp/scratch/xvfb-run.4sjzDY’ ‘~/tmp/scratch/xvfb-run.51WJ4K’ ‘~/tmp/scratch/xvfb-run.5cDBBH’ ‘~/tmp/scratch/xvfb-run.6D3yBz’ ‘~/tmp/scratch/xvfb-run.6FTw7D’ ‘~/tmp/scratch/xvfb-run.7K6Dya’ ‘~/tmp/scratch/xvfb-run.7aQ8FG’ ‘~/tmp/scratch/xvfb-run.8FjCgw’ ‘~/tmp/scratch/xvfb-run.8kbTvd’ ‘~/tmp/scratch/xvfb-run.9MUhQH’ ‘~/tmp/scratch/xvfb-run.9a3V0K’ ‘~/tmp/scratch/xvfb-run.AaADMM’ ‘~/tmp/scratch/xvfb-run.BXw0RI’ ‘~/tmp/scratch/xvfb-run.CaKsxp’ ‘~/tmp/scratch/xvfb-run.CbN0H2’ ‘~/tmp/scratch/xvfb-run.DFJjzO’ ‘~/tmp/scratch/xvfb-run.Dbe3sG’ ‘~/tmp/scratch/xvfb-run.EjXFb3’ ‘~/tmp/scratch/xvfb-run.F4GCCg’ ‘~/tmp/scratch/xvfb-run.GCiyGR’ ‘~/tmp/scratch/xvfb-run.HFJskR’ ‘~/tmp/scratch/xvfb-run.HfIzlo’ ‘~/tmp/scratch/xvfb-run.Hn5yR1’ ‘~/tmp/scratch/xvfb-run.IFrZgD’ ‘~/tmp/scratch/xvfb-run.JwMDkL’ ‘~/tmp/scratch/xvfb-run.MK4S25’ ‘~/tmp/scratch/xvfb-run.Ma0RjT’ ‘~/tmp/scratch/xvfb-run.MhAgWk’ ‘~/tmp/scratch/xvfb-run.NJYIVo’ ‘~/tmp/scratch/xvfb-run.NV8Wyi’ ‘~/tmp/scratch/xvfb-run.OFDv4F’ ‘~/tmp/scratch/xvfb-run.Q9029H’ ‘~/tmp/scratch/xvfb-run.QMWDY1’ ‘~/tmp/scratch/xvfb-run.QNuYMZ’ ‘~/tmp/scratch/xvfb-run.Qeeq67’ ‘~/tmp/scratch/xvfb-run.RQhu4Q’ ‘~/tmp/scratch/xvfb-run.RTbfWz’ ‘~/tmp/scratch/xvfb-run.TlvhxQ’ ‘~/tmp/scratch/xvfb-run.VYlEod’ ‘~/tmp/scratch/xvfb-run.WDmwLQ’ ‘~/tmp/scratch/xvfb-run.XTd5ma’ ‘~/tmp/scratch/xvfb-run.YqcQnl’ ‘~/tmp/scratch/xvfb-run.ZHI1hY’ ‘~/tmp/scratch/xvfb-run.aJWj9F’ ‘~/tmp/scratch/xvfb-run.aOiniP’ ‘~/tmp/scratch/xvfb-run.bf087M’ ‘~/tmp/scratch/xvfb-run.czkgLC’ ‘~/tmp/scratch/xvfb-run.fTGSZ4’ ‘~/tmp/scratch/xvfb-run.fjIaWx’ ‘~/tmp/scratch/xvfb-run.gIcQOM’ ‘~/tmp/scratch/xvfb-run.gJfQwb’ ‘~/tmp/scratch/xvfb-run.grBfRG’ ‘~/tmp/scratch/xvfb-run.h1OlaO’ ‘~/tmp/scratch/xvfb-run.ifTAG8’ ‘~/tmp/scratch/xvfb-run.jbvnwe’ ‘~/tmp/scratch/xvfb-run.luvpBO’ ‘~/tmp/scratch/xvfb-run.nwMpkr’ ‘~/tmp/scratch/xvfb-run.oRSLtx’ ‘~/tmp/scratch/xvfb-run.oaTCEJ’ ‘~/tmp/scratch/xvfb-run.qXodso’ ‘~/tmp/scratch/xvfb-run.rICMdP’ ‘~/tmp/scratch/xvfb-run.rRoGem’ ‘~/tmp/scratch/xvfb-run.tu8Cmq’ ‘~/tmp/scratch/xvfb-run.uR1gDe’ ‘~/tmp/scratch/xvfb-run.usQidu’ ‘~/tmp/scratch/xvfb-run.v9Lo7y’ ‘~/tmp/scratch/xvfb-run.w1SMJU’ ‘~/tmp/scratch/xvfb-run.wMpGrU’ ‘~/tmp/scratch/xvfb-run.wiX09f’ ‘~/tmp/scratch/xvfb-run.z22M7f’ ‘~/tmp/scratch/xvfb-run.zhiWmo’ Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.0
Check: compiled code
Result: NOTE File ‘ALDEx3/libs/ALDEx3.so’: Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’ It is good practice to register native routines and to disable symbol search. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [120s/128s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.0
Check: tests
Result: ERROR Running ‘testthat.R’ [93s/98s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.0
Check: tests
Result: ERROR Running 'testthat.R' [148s] Running the tests in 'tests/testthat.R' failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(ALDEx3) > > test_check("ALDEx3") Saving _problems/test-aldex_lm-103.R Saving _problems/test-aldex_lm-104.R Loading required package: rBeta2009 Attaching package: 'rBeta2009' The following object is masked from 'package:stats': rbeta Loading required package: lmtest Loading required package: zoo Attaching package: 'zoo' The following objects are masked from 'package:base': as.Date, as.Date.numeric Loading required package: sandwich [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-aldex_lm.R:103:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(abs(round(aldex3.res$p.val[2, ], 4) - aldex2.pvals) < 0.015)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE ── Failure ('test-aldex_lm.R:104:4'): test-aldex.R gives similar results to ALDEx2's aldex.glm ── Expected `all(...)` to be TRUE. Differences: `actual`: FALSE `expected`: TRUE [ FAIL 2 | WARN 0 | SKIP 0 | PASS 123 ] Error: ! Test failures. Execution halted Flavor: r-devel-windows-x86_64