Last updated on 2026-10-31 09:51:26 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.2.0.1.1 | 147.54 | 369.84 | 517.38 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.2.0.1.1 | 162.28 | 279.98 | 442.26 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.2.0.1.1 | 100.00 | 242.89 | 342.89 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 2.0.2.0.1.1 | 192.00 | 272.76 | 464.76 | OK | |
| r-devel-windows-x86_64 | 2.0.2.0.1.1 | 275.00 | 369.00 | 644.00 | OK | |
| r-patched-linux-x86_64 | 2.0.1.0.1.0 | 221.25 | 595.19 | 816.44 | OK | |
| r-release-linux-x86_64 | 2.0.0.0.1.9 | 217.88 | 150.27 | 368.15 | ERROR | |
| r-release-macos-arm64 | 2.0.2.0.1.1 | 35.00 | 78.00 | 113.00 | OK | |
| r-release-macos-x86_64 | 2.0.2.0.1.1 | 123.00 | 425.00 | 548.00 | OK | |
| r-release-windows-x86_64 | 2.0.2.0.1.1 | 368.00 | 377.00 | 745.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.2.0.1.1 | 53.00 | 94.00 | 147.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.2.0.1.1 | 122.00 | 254.00 | 376.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.2.0.1.1 | 331.00 | 394.00 | 725.00 | OK |
Version: 2.0.0.0.1.9
Check: tests
Result: ERROR
Running ‘tinytest.R’ [61s/70s]
Running the tests in ‘tests/tinytest.R’ failed.
Complete output:
> if (requireNamespace("tinytest", quietly = TRUE)) {
+ tinytest::test_package("Rduckhts")
+ } else {
+ message("tinytest not available; skipping tests")
+ }
test_ancestry.R............... 0 tests
test_ancestry.R............... 0 tests
test_ancestry.R............... 0 tests
test_ancestry.R............... 156 tests OK
test_ancestry.R............... 156 tests OK
test_ancestry.R............... 170 tests OK 33.1s
test_ancestry_contracts.R..... 0 tests
test_ancestry_contracts.R..... 0 tests
test_ancestry_contracts.R..... 0 tests
test_ancestry_contracts.R..... 54 tests OK 14.4s
test_bam_bed_coverage.R....... 0 tests
test_bam_bed_coverage.R....... 0 tests
test_bam_bed_coverage.R....... 0 tests
test_bam_bed_coverage.R....... 37 tests OK 1.2s
test_bam_file_offset.R........ 0 tests
test_bam_file_offset.R........ 0 tests
test_bam_file_offset.R........ 0 tests [W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
[W::bam_hdr_read] EOF marker is absent. The input is probably truncated
test_bam_file_offset.R........ 280 tests OK 3.2s
test_bam_mate_overlap_counts.R 0 tests
test_bam_mate_overlap_counts.R 0 tests
test_bam_mate_overlap_counts.R 0 tests
test_bam_mate_overlap_counts.R 0 tests
test_bam_mate_overlap_counts.R 18 tests OK 1.3s
test_bam_materialize.R........ 0 tests
test_bam_materialize.R........ 0 tests
test_bam_materialize.R........ 0 tests
test_bam_materialize.R........ 39 tests OK 1.3s
test_bam_mismatch_counts.R.... 0 tests
test_bam_mismatch_counts.R.... 0 tests
test_bam_mismatch_counts.R.... 0 tests
test_bam_mismatch_counts.R.... 18 tests OK 1.2s
test_bam_scan.R............... 0 tests
test_bam_scan.R............... 0 tests
test_bam_scan.R............... 0 tests
test_bam_scan.R............... 0 tests
test_bam_scan.R............... 0 tests
test_bam_scan.R............... 0 tests [W::sam_read1_sam] Parse error at line 4
test_bam_scan.R............... 186 tests OK
test_bam_scan.R............... 194 tests OK
test_bam_scan.R............... 208 tests OK
test_bam_scan.R............... 241 tests OK 5.8s
test_basic.R.................. 0 tests
test_basic.R.................. 1 tests OK
test_basic.R.................. 2 tests OK
test_basic.R.................. 3 tests OK
test_basic.R.................. 4 tests OK
test_basic.R.................. 5 tests OK
test_basic.R.................. 6 tests OK
test_basic.R.................. 7 tests OK
test_basic.R.................. 8 tests OK
test_basic.R.................. 9 tests OK
test_basic.R.................. 10 tests OK
test_basic.R.................. 11 tests OK
test_basic.R.................. 12 tests OK
test_basic.R.................. 13 tests OK
test_basic.R.................. 14 tests OK
test_basic.R.................. 15 tests OK
test_basic.R.................. 16 tests OK
test_basic.R.................. 17 tests OK
test_basic.R.................. 18 tests OK
test_basic.R.................. 19 tests OK
test_basic.R.................. 20 tests OK
test_basic.R.................. 21 tests OK
test_basic.R.................. 22 tests OK
test_basic.R.................. 23 tests OK
test_basic.R.................. 24 tests OK
test_basic.R.................. 25 tests OK
test_basic.R.................. 26 tests OK
test_basic.R.................. 27 tests OK
test_basic.R.................. 28 tests OK
test_basic.R.................. 29 tests OK
test_basic.R.................. 30 tests OK
test_basic.R.................. 31 tests OK
test_basic.R.................. 32 tests OK
test_basic.R.................. 33 tests OK
test_basic.R.................. 34 tests OK
test_basic.R.................. 35 tests OK
test_basic.R.................. 36 tests OK
test_basic.R.................. 37 tests OK
test_basic.R.................. 38 tests OK
test_basic.R.................. 39 tests OK
test_basic.R.................. 40 tests OK
test_basic.R.................. 41 tests OK
test_basic.R.................. 42 tests OK
test_basic.R.................. 43 tests OK
test_basic.R.................. 44 tests OK
test_basic.R.................. 45 tests OK
test_basic.R.................. 46 tests OK
test_basic.R.................. 47 tests OK
test_basic.R.................. 48 tests OK
test_basic.R.................. 49 tests OK
test_basic.R.................. 50 tests OK
test_basic.R.................. 51 tests OK
test_basic.R.................. 52 tests OK
test_basic.R.................. 53 tests OK
test_basic.R.................. 54 tests OK
test_basic.R.................. 55 tests OK
test_basic.R.................. 56 tests OK
test_basic.R.................. 57 tests OK
test_basic.R.................. 58 tests OK
test_basic.R.................. 59 tests OK
test_basic.R.................. 60 tests OK
test_basic.R.................. 61 tests OK
test_basic.R.................. 62 tests OK
test_basic.R.................. 63 tests OK
test_basic.R.................. 64 tests OK
test_basic.R.................. 65 tests OK
test_basic.R.................. 66 tests OK
test_basic.R.................. 67 tests OK
test_basic.R.................. 68 tests OK
test_basic.R.................. 69 tests OK
test_basic.R.................. 70 tests OK
test_basic.R.................. 71 tests OK
test_basic.R.................. 72 tests OK
test_basic.R.................. 73 tests OK
test_basic.R.................. 74 tests OK
test_basic.R.................. 75 tests OK
test_basic.R.................. 76 tests OK
test_basic.R.................. 77 tests OK
test_basic.R.................. 78 tests OK
test_basic.R.................. 78 tests OK
test_basic.R.................. 79 tests OK
test_basic.R.................. 80 tests OK
test_basic.R.................. 81 tests OK
test_basic.R.................. 82 tests OK
test_basic.R.................. 83 tests OK
test_basic.R.................. 84 tests OK
test_basic.R.................. 85 tests OK
test_basic.R.................. 86 tests OK
test_basic.R.................. 87 tests OK
test_basic.R.................. 88 tests OK
test_basic.R.................. 89 tests OK
test_basic.R.................. 89 tests OK
test_basic.R.................. 90 tests OK
test_basic.R.................. 91 tests OK
test_basic.R.................. 92 tests OK
test_basic.R.................. 92 tests OK
test_basic.R.................. 92 tests OK
test_basic.R.................. 93 tests OK
test_basic.R.................. 94 tests OK
test_basic.R.................. 95 tests OK
test_basic.R.................. 96 tests OK
test_basic.R.................. 96 tests OK
test_basic.R.................. 97 tests OK
test_basic.R.................. 98 tests OK
test_basic.R.................. 99 tests OK
test_basic.R.................. 100 tests OK
test_basic.R.................. 101 tests OK
test_basic.R.................. 102 tests OK
test_basic.R.................. 103 tests OK
test_basic.R.................. 104 tests OK
test_basic.R.................. 104 tests OK
test_basic.R.................. 105 tests OK
test_basic.R.................. 106 tests OK
test_basic.R.................. 106 tests OK
test_basic.R.................. 107 tests OK
test_basic.R.................. 108 tests OK
test_basic.R.................. 109 tests OK
test_basic.R.................. 110 tests OK
test_basic.R.................. 111 tests OK
test_basic.R.................. 112 tests OK
test_basic.R.................. 113 tests OK
test_basic.R.................. 114 tests OK
test_basic.R.................. 115 tests OK
test_basic.R.................. 116 tests OK
test_basic.R.................. 117 tests OK
test_basic.R.................. 118 tests OK
test_basic.R.................. 119 tests OK
test_basic.R.................. 120 tests OK
test_basic.R.................. 121 tests OK
test_basic.R.................. 122 tests OK
test_basic.R.................. 123 tests OK
test_basic.R.................. 124 tests OK
test_basic.R.................. 125 tests OK
test_basic.R.................. 126 tests OK
test_basic.R.................. 127 tests OK
test_basic.R.................. 128 tests OK
test_basic.R.................. 129 tests OK
test_basic.R.................. 130 tests OK
test_basic.R.................. 131 tests OK
test_basic.R.................. 483 tests OK
test_basic.R.................. 484 tests OK
test_basic.R.................. 485 tests OK
test_basic.R.................. 486 tests OK
test_basic.R.................. 487 tests OK
test_basic.R.................. 488 tests OK
test_basic.R.................. 489 tests OK
test_basic.R.................. 490 tests OK
test_basic.R.................. 491 tests OK
test_basic.R.................. 492 tests OK
test_basic.R.................. 493 tests OK
test_basic.R.................. 494 tests OK
test_basic.R.................. 495 tests OK
test_basic.R.................. 496 tests OK
test_basic.R.................. 497 tests OK
test_basic.R.................. 498 tests OK
test_basic.R.................. 499 tests OK
test_basic.R.................. 500 tests OK
test_basic.R.................. 501 tests OK
test_basic.R.................. 502 tests OK
test_basic.R.................. 503 tests OK
test_basic.R.................. 504 tests OK
test_basic.R.................. 505 tests OK
test_basic.R.................. 506 tests OK
test_basic.R.................. 507 tests OK
test_basic.R.................. 508 tests OK
test_basic.R.................. 509 tests OK
test_basic.R.................. 510 tests OK
test_basic.R.................. 511 tests OK
test_basic.R.................. 512 tests OK
test_basic.R.................. 513 tests OK
test_basic.R.................. 514 tests OK
test_basic.R.................. 515 tests OK
test_basic.R.................. 516 tests OK
test_basic.R.................. 517 tests OK
test_basic.R.................. 518 tests OK
test_basic.R.................. 519 tests OK
test_basic.R.................. 520 tests OK
test_basic.R.................. 521 tests OK
test_basic.R.................. 522 tests OK
test_basic.R.................. 523 tests OK
test_basic.R.................. 524 tests OK
test_basic.R.................. 525 tests OK All basic tests passed!
test_basic.R.................. 525 tests OK 2.0s
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests
test_bcf.R.................... 0 tests [E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
[E::hts_parse_region] Range is ambiguous. Use {chr1:100-200} or {chr1}:100-200 instead
test_bcf.R.................... 64 tests OK [W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr1' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
[W::vcf_parse] Contig 'chr3' is not defined in the header. (Quick workaround: index the file with tabix.)
[W::vcf_parse] Missing headers may cause later processing to fail
test_bcf.R.................... 258 tests OK [E::bgzf_read_block] Invalid BGZF header at offset 447
[E::bgzf_read] Read block operation failed with error 2 after 0 of 32 bytes
Error: rapi_execute: Invalid Input Error: read_bcf: failed to read or parse BCF/VCF record (error_type: INVALID_INPUT)
Execution halted
Flavor: r-release-linux-x86_64