Last updated on 2026-08-02 04:48:59 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.6 | 13.04 | 287.18 | 300.22 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.10.6 | 8.84 | 210.80 | 219.64 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.10.6 | 12.00 | 251.89 | 263.89 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.6 | 9.00 | 194.43 | 203.43 | ERROR | |
| r-devel-windows-x86_64 | 0.10.6 | 15.00 | 258.00 | 273.00 | ERROR | |
| r-patched-linux-x86_64 | 0.10.6 | 13.57 | 271.61 | 285.18 | ERROR | |
| r-release-linux-x86_64 | 0.10.6 | 12.64 | 275.59 | 288.23 | ERROR | |
| r-release-macos-arm64 | 0.10.6 | 3.00 | 80.00 | 83.00 | OK | |
| r-release-macos-x86_64 | 0.10.6 | 10.00 | 357.00 | 367.00 | OK | |
| r-release-windows-x86_64 | 0.10.6 | 16.00 | 376.00 | 392.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.10.6 | OK | ||||
| r-oldrel-macos-x86_64 | 0.10.6 | 8.00 | 304.00 | 312.00 | OK | |
| r-oldrel-windows-x86_64 | 0.10.6 | 21.00 | 372.00 | 393.00 | OK |
Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘competingRisk.Rmd’ using rmarkdown
--- finished re-building ‘competingRisk.Rmd’
--- re-building ‘customizingpopTime.Rmd’ using rmarkdown
--- finished re-building ‘customizingpopTime.Rmd’
--- re-building ‘plotabsRisk.Rmd’ using rmarkdown
--- finished re-building ‘plotabsRisk.Rmd’
--- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown
Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `plot()`:
! `...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
---
Backtrace:
▆
1. ├─base::plot(...)
2. └─casebase:::plot.singleEventCB(...)
3. ├─base::do.call(...)
4. └─visreg (local) `<fn>`(...)
5. └─visreg:::finalize_visreg(v, plot, ...)
6. ├─base::plot(v, ...)
7. └─visreg:::plot.visreg(v, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
--- failed re-building ‘plotsmoothHazard.Rmd’
--- re-building ‘popTime.Rmd’ using rmarkdown
--- finished re-building ‘popTime.Rmd’
--- re-building ‘smoothHazard.Rmd’ using rmarkdown
Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `FUN()`:
! `...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
---
Backtrace:
▆
1. ├─base::plot(model4, hazard.params = list(alpha = 0.05))
2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05))
3. ├─base::do.call(...)
4. └─visreg (local) `<fn>`(...)
5. └─visreg:::finalize_visreg(v, plot, ...)
6. ├─base::plot(v, ...)
7. └─visreg:::plot.visreg_list(v, ...)
8. ├─base::structure(...)
9. └─base::lapply(x, plot, ...)
10. ├─base (local) FUN(X[[i]], ...)
11. └─visreg:::plot.visreg(X[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
--- failed re-building ‘smoothHazard.Rmd’
--- re-building ‘time-varying-covariates.Rmd’ using rmarkdown
--- finished re-building ‘time-varying-covariates.Rmd’
SUMMARY: processing the following files failed:
‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.10.6
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
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‘~/tmp/scratch/RtmpKhnVJT’ ‘~/tmp/scratch/RtmpL6d0rI’
‘~/tmp/scratch/RtmpLMLvNC’ ‘~/tmp/scratch/RtmpMCfgwg’
‘~/tmp/scratch/RtmpMKYJtN’ ‘~/tmp/scratch/RtmpMN2CpC’
‘~/tmp/scratch/RtmpNSoPAo’ ‘~/tmp/scratch/RtmpNbwSZ5’
‘~/tmp/scratch/RtmpNvs9da’ ‘~/tmp/scratch/RtmpO74tnu’
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‘~/tmp/scratch/RtmpOyP5X2’ ‘~/tmp/scratch/RtmpP6Tivd’
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‘~/tmp/scratch/RtmpW1jpLB’ ‘~/tmp/scratch/RtmpW27ao1’
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‘~/tmp/scratch/RtmpdJ8rMo’ ‘~/tmp/scratch/RtmpdLiVkd’
‘~/tmp/scratch/RtmpdRwhjm’ ‘~/tmp/scratch/RtmpdkACU2’
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‘~/tmp/scratch/RtmpfnVbtA’ ‘~/tmp/scratch/RtmpgrET9T’
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‘~/tmp/scratch/RtmpjIUpcQ’ ‘~/tmp/scratch/Rtmpjkmw4S’
‘~/tmp/scratch/RtmpkXndzH’ ‘~/tmp/scratch/RtmpkZgBMK’
‘~/tmp/scratch/RtmpkZuTNh’ ‘~/tmp/scratch/RtmpklVSMo’
‘~/tmp/scratch/RtmpkqzoqS’ ‘~/tmp/scratch/Rtmpl6rKKb’
‘~/tmp/scratch/RtmplGvm0J’ ‘~/tmp/scratch/Rtmpluq1Ig’
‘~/tmp/scratch/Rtmpm0rWZm’ ‘~/tmp/scratch/RtmpmNUrol’
‘~/tmp/scratch/RtmpmOPyrk’ ‘~/tmp/scratch/Rtmpp3tENA’
‘~/tmp/scratch/RtmppaCtOQ’ ‘~/tmp/scratch/RtmppcXKgO’
‘~/tmp/scratch/Rtmppev2yO’ ‘~/tmp/scratch/RtmppydHPl’
‘~/tmp/scratch/Rtmpq9Uisn’ ‘~/tmp/scratch/Rtmpr79TnG’
‘~/tmp/scratch/RtmprvUZY9’ ‘~/tmp/scratch/Rtmps0epa6’
‘~/tmp/scratch/RtmpsDmPmY’ ‘~/tmp/scratch/RtmpsJL3xq’
‘~/tmp/scratch/RtmpsLmDcD’ ‘~/tmp/scratch/RtmpsUVgQG’
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‘~/tmp/scratch/RtmpxwDL6M’ ‘~/tmp/scratch/Rtmpz0eWOc’
‘~/tmp/scratch/RtmpzkBxfq’ ‘~/tmp/scratch/ccoIHzpK.s’
‘~/tmp/scratch/xvfb-run.1hN4RK’ ‘~/tmp/scratch/xvfb-run.2UaIT4’
‘~/tmp/scratch/xvfb-run.4G8iO4’ ‘~/tmp/scratch/xvfb-run.4PJSqG’
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‘~/tmp/scratch/xvfb-run.F8jdFA’ ‘~/tmp/scratch/xvfb-run.FLEDZX’
‘~/tmp/scratch/xvfb-run.HBCf8j’ ‘~/tmp/scratch/xvfb-run.HN1nAD’
‘~/tmp/scratch/xvfb-run.I01C11’ ‘~/tmp/scratch/xvfb-run.IBdDhr’
‘~/tmp/scratch/xvfb-run.IUUGHJ’ ‘~/tmp/scratch/xvfb-run.IXIqL4’
‘~/tmp/scratch/xvfb-run.IelQfi’ ‘~/tmp/scratch/xvfb-run.IrFeLu’
‘~/tmp/scratch/xvfb-run.KHrE2N’ ‘~/tmp/scratch/xvfb-run.L5KRaJ’
‘~/tmp/scratch/xvfb-run.Lj4aMa’ ‘~/tmp/scratch/xvfb-run.NQ4LeK’
‘~/tmp/scratch/xvfb-run.O4IdUS’ ‘~/tmp/scratch/xvfb-run.Owxtg6’
‘~/tmp/scratch/xvfb-run.PVWEM1’ ‘~/tmp/scratch/xvfb-run.QNgNz0’
‘~/tmp/scratch/xvfb-run.VfGjek’ ‘~/tmp/scratch/xvfb-run.Vue8TE’
‘~/tmp/scratch/xvfb-run.W5dZ4l’ ‘~/tmp/scratch/xvfb-run.WLeLI7’
‘~/tmp/scratch/xvfb-run.XTxUHN’ ‘~/tmp/scratch/xvfb-run.Xnq3PF’
‘~/tmp/scratch/xvfb-run.Yckav3’ ‘~/tmp/scratch/xvfb-run.YsRbX3’
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‘~/tmp/scratch/xvfb-run.az2C4l’ ‘~/tmp/scratch/xvfb-run.cnBGDw’
‘~/tmp/scratch/xvfb-run.eYWo6y’ ‘~/tmp/scratch/xvfb-run.eldCeH’
‘~/tmp/scratch/xvfb-run.fa4kzb’ ‘~/tmp/scratch/xvfb-run.hIxHzQ’
‘~/tmp/scratch/xvfb-run.iH2rL5’ ‘~/tmp/scratch/xvfb-run.iYajfU’
‘~/tmp/scratch/xvfb-run.oqqm9T’ ‘~/tmp/scratch/xvfb-run.oxcArr’
‘~/tmp/scratch/xvfb-run.pIFrOQ’ ‘~/tmp/scratch/xvfb-run.qvcJE0’
‘~/tmp/scratch/xvfb-run.qzDvGf’ ‘~/tmp/scratch/xvfb-run.rBs1s1’
‘~/tmp/scratch/xvfb-run.rTWwIg’ ‘~/tmp/scratch/xvfb-run.sjmrSZ’
‘~/tmp/scratch/xvfb-run.x2xI0e’ ‘~/tmp/scratch/xvfb-run.yTt0uR’
‘~/tmp/scratch/xvfb-run.ymRbCG’ ‘~/tmp/scratch/xvfb-run.ywCH3j’
‘~/tmp/scratch/xvfb-run.zNniRG’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.6
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘competingRisk.Rmd’ using rmarkdown
--- finished re-building ‘competingRisk.Rmd’
--- re-building ‘customizingpopTime.Rmd’ using rmarkdown
--- finished re-building ‘customizingpopTime.Rmd’
--- re-building ‘plotabsRisk.Rmd’ using rmarkdown
--- finished re-building ‘plotabsRisk.Rmd’
--- re-building ‘plotsmoothHazard.Rmd’ using rmarkdown
Quitting from plotsmoothHazard.Rmd:68-81 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `plot()`:
! `...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
---
Backtrace:
▆
1. ├─base::plot(...)
2. └─casebase:::plot.singleEventCB(...)
3. ├─base::do.call(...)
4. └─visreg (local) `<fn>`(...)
5. └─visreg:::finalize_visreg(v, plot, ...)
6. ├─base::plot(v, ...)
7. └─visreg:::plot.visreg(v, ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'plotsmoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic arguments:
• print.cond = TRUE
• main = "No Hormonal Therapy Hazard Function"
--- failed re-building ‘plotsmoothHazard.Rmd’
--- re-building ‘popTime.Rmd’ using rmarkdown
--- finished re-building ‘popTime.Rmd’
--- re-building ‘smoothHazard.Rmd’ using rmarkdown
Quitting from smoothHazard.Rmd:121-125 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlib_error_dots_nonempty>
Error in `FUN()`:
! `...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
---
Backtrace:
▆
1. ├─base::plot(model4, hazard.params = list(alpha = 0.05))
2. └─casebase:::plot.singleEventCB(model4, hazard.params = list(alpha = 0.05))
3. ├─base::do.call(...)
4. └─visreg (local) `<fn>`(...)
5. └─visreg:::finalize_visreg(v, plot, ...)
6. ├─base::plot(v, ...)
7. └─visreg:::plot.visreg_list(v, ...)
8. ├─base::structure(...)
9. └─base::lapply(x, plot, ...)
10. ├─base (local) FUN(X[[i]], ...)
11. └─visreg:::plot.visreg(X[[i]], ...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'smoothHazard.Rmd' failed with diagnostics:
`...` must be empty.
✖ Problematic argument:
• print.cond = TRUE
--- failed re-building ‘smoothHazard.Rmd’
--- re-building ‘time-varying-covariates.Rmd’ using rmarkdown
--- finished re-building ‘time-varying-covariates.Rmd’
SUMMARY: processing the following files failed:
‘plotsmoothHazard.Rmd’ ‘smoothHazard.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.10.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [36s/39s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(casebase)
See example usage at http://sahirbhatnagar.com/casebase/
> library(data.table)
Attaching package: 'data.table'
The following object is masked from 'package:base':
%notin%
> library(survival)
>
> test_check("casebase")
Saving _problems/test-plotSingleEventCB-39.R
[ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• GBM is not implemented (1): 'test-gbm.R:4:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-plotSingleEventCB.R:39:5'): no error in plot method for singleEventCB objects - hazard function ──
Expected `inherits(outglm, "try-error")` to be FALSE.
Differences:
`actual`: TRUE
`expected`: FALSE
[ FAIL 1 | WARN 16 | SKIP 1 | PASS 255 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc