Last updated on 2026-10-24 10:52:34 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4.0 | 8.71 | 497.09 | 505.80 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.4.0 | 5.62 | 61.22 | 66.84 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.4.0 | 310.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4.0 | 310.30 | OK | |||
| r-devel-windows-x86_64 | 1.4.0 | 11.00 | 473.00 | 484.00 | OK | |
| r-patched-linux-x86_64 | 1.4.0 | 8.87 | 473.75 | 482.62 | OK | |
| r-release-linux-x86_64 | 1.4.0 | 7.50 | 468.73 | 476.23 | OK | |
| r-release-macos-arm64 | 1.4.0 | 1.00 | 96.00 | 97.00 | OK | |
| r-release-macos-x86_64 | 1.4.0 | 5.00 | 259.00 | 264.00 | OK | |
| r-release-windows-x86_64 | 1.4.0 | 11.00 | 458.00 | 469.00 | OK | |
| r-oldrel-macos-arm64 | 1.4.0 | 1.00 | 98.00 | 99.00 | OK | |
| r-oldrel-macos-x86_64 | 1.4.0 | 5.00 | 281.00 | 286.00 | OK | |
| r-oldrel-windows-x86_64 | 1.4.0 | 14.00 | 662.00 | 676.00 | OK |
Version: 1.4.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/6s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(vaccine)
vaccine (version 1.4.0).
Type ?vaccine to get started.
>
> test_check("vaccine")
Saving _problems/test-test-core-functions-145.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 65 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-test-core-functions.R:144:1'): (code run outside of `test_that()`) ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─vaccine::est_med(dat = dat_sample, type = "NP", t_0 = 578, params_np = params_med_np(surv_type = "Cox")) at test-test-core-functions.R:144:1
2. └─vaccine:::construct_Q_n(p$surv_type, dat_v2_rd, vals)
3. └─survival::basehaz(model_srv, centered = F)
4. ├─survival::survfit(fit, se.fit = FALSE)
5. └─survival:::survfit.coxph(fit, se.fit = FALSE)
6. └─survival:::model.matrix.coxph(object, data = mf)
7. └─stats::delete.response(object$terms)
8. └─stats (local) off(a$specials[[i]])
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 65 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.4.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘vaccine.Rmd’ using rmarkdown
Quitting from vaccine.Rmd:51-54 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `UseMethod()`:
! no applicable method for 'predict' applied to an object of class "NULL"
---
Backtrace:
▆
1. └─vaccine::est_ce(dat = dat, type = "NP", t_0 = 578)
2. └─vaccine:::est_np(...)
3. └─vaccine:::construct_Q_n(p$surv_type, dat_v2_rd, vals)
4. ├─base::suppressWarnings(do.call(survML::stackG, survML_args))
5. │ └─base::withCallingHandlers(...)
6. ├─base::do.call(survML::stackG, survML_args)
7. └─survML (local) `<fn>`(...)
8. ├─stats::predict(P_Delta_opt, newX = newX)
9. └─survML:::predict.p_delta_SuperLearner(P_Delta_opt, newX = newX)
10. ├─stats::predict(fit$reg.object, newdata = newX)
11. └─SuperLearner::predict.SuperLearner(fit$reg.object, newdata = newX)
12. ├─base::do.call(...)
13. └─stats::predict(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'vaccine.Rmd' failed with diagnostics:
no applicable method for 'predict' applied to an object of class "NULL"
--- failed re-building ‘vaccine.Rmd’
SUMMARY: processing the following file failed:
‘vaccine.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc