Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.
Version: | 2.0.0 |
Depends: | R (≥ 3.5.0) |
Imports: | ape, Rcpp, RcppProgress |
LinkingTo: | Rcpp, RcppProgress |
Suggests: | knitr, rmarkdown |
Published: | 2024-06-14 |
Author: | Satoshi Aoki [aut, cph, cre] |
Maintainer: | Satoshi Aoki <aokis1ll1 at gmail.com> |
BugReports: | https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/Sa-to-shi-A-o-ki/Apoderoides |
NeedsCompilation: | yes |
Materials: | NEWS |
CRAN checks: | Apoderoides results [issues need fixing before 2024-06-28] |
Reference manual: | Apoderoides.pdf |
Vignettes: |
Apoderoides Tutorial |
Package source: | Apoderoides_2.0.0.tar.gz |
Windows binaries: | r-devel: Apoderoides_1.0.1.zip, r-release: Apoderoides_1.0.1.zip, r-oldrel: Apoderoides_1.0.1.zip |
macOS binaries: | r-release (arm64): Apoderoides_2.0.0.tgz, r-oldrel (arm64): Apoderoides_2.0.0.tgz, r-release (x86_64): Apoderoides_2.0.0.tgz, r-oldrel (x86_64): Apoderoides_2.0.0.tgz |
Old sources: | Apoderoides archive |
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