WayFindR: Computing Graph Structures on WikiPathways

Converts pathways from 'WikiPathways' GPML format into 'igraph' objects. Includes tools to find all cycles in the resulting graphs and determine which ones involve negative feedback (inhibition).

Version: 0.1.2
Depends: R (≥ 3.5)
Imports: graphics, utils, XML, igraph
Suggests: knitr, rmarkdown, Polychrome
Published: 2024-04-10
DOI: 10.32614/CRAN.package.WayFindR
Author: Kevin R. Coombes [aut, cre], Polina Bombina [aut]
Maintainer: Kevin R. Coombes <krc at silicovore.com>
License: Artistic-2.0
URL: http://oompa.r-forge.r-project.org/
NeedsCompilation: no
CRAN checks: WayFindR results

Documentation:

Reference manual: WayFindR.pdf
Vignettes: WayFindR: Creating Graph Structures From WikiPathways Files
WayFindR: Computing Graph Metrics on WikiPathways

Downloads:

Package source: WayFindR_0.1.2.tar.gz
Windows binaries: r-devel: WayFindR_0.1.2.zip, r-release: WayFindR_0.1.2.zip, r-oldrel: WayFindR_0.1.2.zip
macOS binaries: r-release (arm64): WayFindR_0.1.2.tgz, r-oldrel (arm64): WayFindR_0.1.2.tgz, r-release (x86_64): WayFindR_0.1.2.tgz, r-oldrel (x86_64): WayFindR_0.1.2.tgz

Linking:

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