beautier: 'BEAUti' from R

'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.

Version: 2.6.12
Imports: ape, rappdirs, purrr, rlang (≥ 1.1.0), seqinr, stringr
Suggests: knitr, markdown, readr, rmarkdown, testthat (≥ 2.1.0)
Published: 2024-04-01
DOI: 10.32614/CRAN.package.beautier
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), Paul Van Els ORCID iD [ctb], Raphael Scherrer ORCID iD [ctb], Yacine B. Chehida ORCID iD [ctb], Katharine S. Walter ORCID iD [ctb], Gary Napier ORCID iD [ctb], Jason Griffiths ORCID iD [ctb], Thijs Janzen ORCID iD [ctb], Pedro Taucce ORCID iD [ctb], Olivier Roy [ctb], Jana Riederer ORCID iD [ctb]
Maintainer: Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com>
BugReports: https://github.com/ropensci/beautier/issues
License: GPL-3
URL: https://docs.ropensci.org/beautier/, https://github.com/ropensci/beautier
NeedsCompilation: no
Language: en-US
Citation: beautier citation info
In views: Phylogenetics
CRAN checks: beautier results

Documentation:

Reference manual: beautier.html , beautier.pdf
Vignettes: beautier demo (source, R code)
Examples (source, R code)
Inference Models (source, R code)

Downloads:

Package source: beautier_2.6.12.tar.gz
Windows binaries: r-devel: beautier_2.6.12.zip, r-release: beautier_2.6.12.zip, r-oldrel: beautier_2.6.12.zip
macOS binaries: r-release (arm64): beautier_2.6.12.tgz, r-oldrel (arm64): beautier_2.6.12.tgz, r-release (x86_64): beautier_2.6.12.tgz, r-oldrel (x86_64): beautier_2.6.12.tgz
Old sources: beautier archive

Reverse dependencies:

Reverse depends: babette
Reverse imports: beastier, mcbette, nodeSub
Reverse suggests: mauricer

Linking:

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